Array 1 108219-106254 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCEE01000001.1 Salmonella enterica strain C3 NODE_1_length_475151_cov_82.1947_ID_35069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108218 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 108157 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108096 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 108035 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107974 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107913 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107852 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107790 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107729 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107668 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107607 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107546 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107485 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107424 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107363 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107302 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107241 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107180 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107119 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107058 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106997 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106935 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106832 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106771 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106710 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106649 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106588 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106527 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106466 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106405 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106344 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106283 29 96.6 0 A............................ | A [106256] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125843-124350 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCEE01000001.1 Salmonella enterica strain C3 NODE_1_length_475151_cov_82.1947_ID_35069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125842 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125781 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125720 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125659 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125598 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125537 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125476 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125415 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125354 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125293 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125232 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125171 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125110 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 125049 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124988 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124927 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124865 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124804 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124743 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124682 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124621 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124560 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124499 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124438 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124377 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //