Array 1 1663937-1659636 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022022.1 Capnocytophaga endodontalis strain ChDC OS43 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 1663936 46 97.8 30 ................................C............. TACAGTACCTGCGTGTAGATAAAGAAGATT 1663860 46 100.0 30 .............................................. TGTTCACTTCCAATGAAGGGGTGATGTCTC 1663784 46 100.0 30 .............................................. ACCGAGAACCAAGCGATGATTGCCAAGATA 1663708 46 97.8 30 ......................C....................... TCAACCCTAATTATCCCGATGACCCTCACA 1663632 46 100.0 31 .............................................. TTTATCTCAATACCACTTTCCCTTAAATTCT 1663555 46 100.0 30 .............................................. TATCTTTGTCGCCGTTAGGCTCTTTTAAGT 1663479 46 100.0 30 .............................................. GTAATCATTGCCAACTCCATTCGCCAAGTA 1663403 46 100.0 30 .............................................. ACCTGCTCTTTAATATACTTGCGCTGCTCT 1663327 46 100.0 30 .............................................. ATTAGATACATACGCACTTAAATAGTACCT 1663251 46 100.0 30 .............................................. CAATACAAACCGCTCTATACAACAACCTTA 1663175 46 100.0 30 .............................................. TTACTATCTGAAAGGGCTAATAAGTTAGAT 1663099 46 97.8 30 T............................................. GTAATCATTGCCAACTCCATTCGCCAAGTA 1663023 46 100.0 30 .............................................. TTCAGGATACGCCTTTTATACGTTGTATTG 1662947 46 97.8 30 ................................C............. AGTGTTCAGATTATCAAAATCTGCCTCATC 1662871 46 97.8 30 ................................C............. CTAACCTCTAAACCTATGTTCACCAATATA 1662795 46 97.8 30 ................................C............. ACAAAAGGCTATGATTTAGATGAAGACATT 1662719 46 100.0 30 .............................................. GTAATCATTGCCAACTCCATTCGCCAAGTA 1662643 46 100.0 30 .............................................. TTCAGGATACGCCTTTTATACGTTGTATTG 1662567 46 100.0 30 .............................................. AATACCTATTCGTAGAAACCAACGATGCTC 1662491 46 100.0 30 .............................................. TTTTTTGTAATTATTACAATCACTACCCTT 1662415 46 100.0 30 .............................................. AGCCACTGGACACTTAGGAAGTGCAGTTAC 1662339 46 97.8 29 ................................C............. GTTACAAAAGACGCAACAGCAAAGCAGTT 1662264 46 100.0 30 .............................................. TTTGAAAGTATTCTACAAATCGACAAAGTA 1662188 46 100.0 30 .............................................. TTTTGTAAATGTTTGATTTTCAGCGAACTA 1662112 46 100.0 30 .............................................. TTACCGCCCGCACTGGCAACCTCATCACAG 1662036 46 100.0 30 .............................................. TCCGCTGGAGGTATATATTATTTTGCAACT 1661960 46 100.0 30 .............................................. GCTCTTTTTCAGGTGGTGAAGAGCCTAAGC 1661884 46 100.0 30 .............................................. AGAACGATTTATTACCGAAGAGCGCAAAGA 1661808 46 100.0 30 .............................................. TGCCGTGTTATTCTTGAAATCTGGAAACTT 1661732 46 100.0 30 .............................................. TATAAGGTCTATAAAATGTATAAAACAGAT 1661656 46 100.0 29 .............................................. ATTACGAAAAGCTAATACTCTCAATACGT 1661581 46 100.0 30 .............................................. ATTTGAGAGTAACAGTATCATCAAGAGACA 1661505 46 100.0 29 .............................................. AACTCGTAAAAAATATGACTGAAATAATT 1661430 46 100.0 29 .............................................. ATATCAATATCACCATTGAGAGGCGAAGT 1661355 46 100.0 30 .............................................. CTTGCTACACCCTGCTATCATAGCTACAGC 1661279 46 100.0 30 .............................................. TAACCGAAAATTCAAGATTAGGCGAATGCA 1661203 46 100.0 30 .............................................. TTTCCGTTATAAAAAGTCGTTTTTCCGTTA 1661127 46 100.0 30 .............................................. AGATTGTATTGCAGTTTTGCAAAAGGAATA 1661051 46 100.0 30 .............................................. ATTTTTTGTTTAAGAATTTGTGTTTATGCT 1660975 46 100.0 31 .............................................. TTGTTCGTGCTATCATAAAACAGATGGGCAA 1660898 46 100.0 30 .............................................. AAGGAAACATCGCAACAGATTGGAGCGAAT 1660822 46 100.0 30 .............................................. TGGCTGAAGAATTGTGAAACCGCTGGAAAT 1660746 46 100.0 30 .............................................. ATTTTTTGTTTAAGAATTTGTGTTTATGCT 1660670 46 100.0 30 .............................................. TCACTGACAAATTTAGTCGCTTCCCATCTA 1660594 46 100.0 30 .............................................. CATAGGGAGCTTTTGAGCATTAAGGGGACT 1660518 46 100.0 31 .............................................. AGACGAGGTAGAGGAAATAATGGGCTTCCTT 1660441 46 100.0 30 .............................................. TTAAGCTATTTTTCCGAGCAAATTTACATT 1660365 46 100.0 30 .............................................. GTTTTACTTATTTTAGTTAAACATTTGTCT 1660289 46 100.0 30 .............................................. ATACAATTAGATGATAGTGAGGATGAGACT 1660213 46 100.0 30 .............................................. AAGCCACAGGGTCAAGCACATCAAAGTCTT 1660137 46 100.0 30 .............................................. AGCAGAAGCGAGAGATAGAGGAAGCGTATT 1660061 46 100.0 30 .............................................. AGACCTAACCATTGCATTTTATCGCATTGG 1659985 46 100.0 30 .............................................. ATTTGGAGATTTGTTTATAGCCGATGTAGC 1659909 46 100.0 30 .............................................. AAGGCTATCGGTTGTATGTTTGCGCCTGTA 1659833 46 100.0 30 .............................................. CACTTTTATCCCTTGAAGGGGCTGGAATTG 1659757 46 100.0 30 .............................................. TCTTCATATCGTAGTATATATCCTCGATAT 1659681 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 57 46 99.7 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Left flank : ATAGCCTATGGAGATCATTTGGTAACCCTACCCTTGTACTTAACAGGGATGGTGATTATCAGTTATCTTTTTGTGAGAGAGAGACCCCAAGAATGCCTACAAAGTGCCTTACGCATTGTTCTTCCGTTTACGGGGTTAATGCTTATTGCAGGGAGTCTGCCTGATGCACATTTCAGTTTAGCTCTGATTTATATTGTGAGCACAGGGGCAGCTTTTTTATTAGGAATGCTCATTGCCACCGTGAGCAAGACGTACCAAAAGATAGGTTTATCCGTGTTGGCTTTTCTGCTGGTAGTTGCCGTACGGTTGTCGTTTTCAGCGGAGTTTCAATATTTGATAGGCGTACATTGGTATACCTTAGGAAGTTAATCATCTAATAGAATATAGAAAGAGGTTGCTCAGAAGTCTGGGCAACCTTTTTTATGCTTTGTTACTTATAAAATATTTTTTTTGTATCTTCGCGCTTTATTGTTGAACTATTTGATAAATTAAACATTTAT # Right flank : CTCAATATTTTAAAGGTTTTAGTATCAATCAGTTTTGCTTAAAAACAGTACTGAAAAACCTCCTCTTTTACCTTATAAACAAAGGCTAAAGAGGAGGTTTTCTCTTTCCTATTCTTCTTAAAAAAGTTCTAATTGCACATAAGTTTCGGGCGCTGCTGTTTCTCTCTGACAGTAAAAGAACTCCATATCGCCAAACTGCTTATCAGTTAAGCACATTATAGCTATATTGCCATACTGAGGTAAGTTTTGTTTTACACGATTGATATGCACTTGGGCATTCTCTCTACTAGGGCAATGCCTTATGTACATCGAAAACTGAAAGAGCGTAAAACCGTCCTTTATGAGTTTATCACGAAAGTTCTGTGCTTCTTTACGCATCTTTTTCGTTTCTGTTGGCAAATCGTATAATACTAATACCCACATAATTCTATAAGCATTATATCGTTCGGCTATGATCATAATTCAGGATAAGCTATCAGTCGCTTTTCACCCGTATAGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //