Array 1 113562-112190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPJ010000008.1 Nocardia farcinica strain BJ06-0096 NODE_12_length_270725_cov_32.672267, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113561 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 113500 29 100.0 32 ............................. CGCAGTCCATTCCGCGCGATCCCGCGCAGCAA 113439 29 100.0 32 ............................. ACCGCGGGCGCTGCCGGGGATCTCGTCGTCGA 113378 29 100.0 32 ............................. TCAGCCTTGATCTCTTCGCACTGCTCCCTTGC 113317 29 100.0 32 ............................. CGGAAGCGGGTCCGCCACCGCGGGATTCCCGG 113256 29 100.0 32 ............................. GATTGCACGATGCCGTCCCGCCCGATTCCCTC 113195 29 100.0 32 ............................. GCCGCATCGTCCAGGCCCGCGCCGAGGACCTT 113134 29 100.0 32 ............................. GCCTCGCCGAGATCGCCGAGCAGCTGCGCATC 113073 29 100.0 32 ............................. ATCACGCCCGTGCCCTCGGCGGCGGGCAGGAA 113012 29 100.0 32 ............................. TCTCCGGCGCGACGCACCACCGTGGCCACGTC 112951 29 100.0 32 ............................. TGGCCGCGCCAGCACTCGCGGTGGTGGCTGAT 112890 29 100.0 32 ............................. CGGCGACCGAAATCCTCGCTCCGTCCAGCGTT 112829 29 100.0 32 ............................. TTCCGCATTGATAGATTCCAGGAACGCGAACT 112768 29 100.0 33 ............................. CGCCTGCGCAAGCGCGCCGCCGATCTCGTCGGC 112706 29 100.0 32 ............................. ACCGACACCCCGCCGGGCCGAATCCGCACCAG 112645 29 100.0 32 ............................. GCCAGCGCCAGCAGTCCGCCCATCACGCCGCT 112584 29 100.0 32 ............................. CGGGAATCGAGCGGCCGTTGTGGAAGGATCGG 112523 29 100.0 32 ............................. TCACCATCGCCACGCTCACGATGCCGGTGCTG 112462 29 100.0 32 ............................. TCGTGGCTGGCTGCGTAGCGGGCGGTGTGGGT 112401 29 100.0 32 ............................. GCTTCGGCCTCGCAGCTCGCTGCCGCCGAGGA 112340 29 100.0 32 ............................. TGCTCGACCCCGGTGCGCGTGAGGCACCAGAC 112279 29 100.0 32 ............................. CAATGTCAGGTTTTCCAACATTGGACCGCCCA 112218 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGAGCTGCGGTGGTCGTGGGTCGTCGCCGGACCAGGCACGTAGGGCGGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCGGTCTTGCCCCTCAGGGAGGTACATCGGTGAAAAGTGAATGAAAAATGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCGATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCCTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCACGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10494-12047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPJ010000012.1 Nocardia farcinica strain BJ06-0096 NODE_19_length_198265_cov_29.268389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10494 29 93.1 32 .......G..............C...... AAGAAATATCGAGTCGCCCTGTACTCGACCAT 10555 29 100.0 32 ............................. CGGTTGCGCGCCATGCAGAAGGGCGACGTGGT 10616 29 96.6 32 ............................A CCACCTGCGCCTGCTTGACCTCGACGCCGTGG 10677 29 100.0 32 ............................. CCCGGACCCGCCGAAGGCCATACCGATACCCG 10738 29 96.6 32 ......A...................... GGGACTTTACTGGTTTCGCTTTCGATCCCCGT 10799 29 100.0 32 ............................. GAGTTTCGCGGGAAGCAAGCTGTGCTCGTAGT 10860 29 100.0 32 ............................. ACGTACGGGCCACCCAGCGGATCCACGCTGAC 10921 29 100.0 32 ............................. GGTCGATCGGGGGTGGGTGGGGGTGCTGGTGA 10982 29 100.0 32 ............................. GGCAACGGCACCGGCGAGAACTTCACCGGCAT 11043 29 100.0 32 ............................. CGCCGCAGCCTCCATACGGCAAGCCGCCCCAG 11104 29 100.0 32 ............................. CCATCGGCAGGGTCGCAGCCCTCGCAGTCAGG 11165 29 100.0 32 ............................. CCCCACCGGTCGGACTCGAGCGCTTCGGGGTG 11226 29 100.0 32 ............................. CCGAGCGCCCGCAGGACAGCGAGGTAAAACGG 11287 29 100.0 32 ............................. GCACACCCCTCCACCTCGAGGTCCGGGTGCAG 11348 29 100.0 32 ............................. GAATCGGCACGGTCGGGGTGGTCGAAGGTCAG 11409 29 100.0 32 ............................. CAGATCGAGGTCGGGTCGATGGGCAGCGCCGC 11470 29 100.0 32 ............................. GACCGGATGGCCTTGAACGCCGCGTCCTCGCA 11531 29 96.6 32 ............................A CAGGGTCTAGGTACAGCTGGCGTACTGCCTCC 11592 29 100.0 32 ............................. TCGCTGGCCGCGTGGTGCCCGCGCTGGTGGGA 11653 29 96.6 32 ..............A.............. ACCTTCCAGCGCCTGGAGAAGGGAGAGCGCAC 11714 29 96.6 32 ........................A.... GAGCAGGTACTCGACGTGCTCGGGCTGCGGGT 11775 29 100.0 32 ............................. AGTGTGGTCGTGCAGCCTGCCGGACCAGCGGG 11836 29 100.0 32 ............................. CGCGTCGTGCTCGGCGGCTACAGCCAGGGCGC 11897 29 100.0 32 ............................. GGGTAGACGCCGTCGGCGTCGAGATCGATGTC 11958 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 12019 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.5 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : AAATCCCCCACACCGCTGAACCAGAAACCACCACCGCTCACGACATACGCATCATCGCCCGCAACCGAGTCGCCTTCGGCAAGAAGAAGCACAACCGACAGGCCGGGACCGTCACCCTCCACACAGCTACCTATGAAGGCAGACTCGAAGTAACCGACCCCGAACGCCTCACCACAGCCCTGCTCAACGGAATCGGACCAGCCAAAGCCTACGGCTGCGGACTACTCACCCTGGCGCCGCTGCAAAGACAATGACTTCCCGATACCGGAGGCACAGCCTCCACCAGTCCACACGAGCGACAAGCAAGATCATGAGCGTCAATCGTCGACCACCGCCACATCAAACGCGACGAGAACCCGATCACCGCGATCAACCCGATTCGCACAACCAGAACTGGTGGGATGCTGGCCGCCGGTCCCTCTACCGGCCTCCCGCGCCACCCGCAGAGCAAAGTGAATGAAAAACGCGCCCCTCGCGAATATAACAGCAGGTCAGGAAGT # Right flank : GTGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTCAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCCCCGACGAGGCATTGAGCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCGATCCGCTAGCCGCCGCCACTGGCCAGCGTGCTCAACTGCGCCCCTAATTGGCCAGTCCGGGGTTCGCATAGCCGACCTCGTACGCGCGATCGAGGAAAATGGCGACTTTGGAGGACAAGCACGCGATCAGCGCGATCGCCTCGCCTCAGTTGGACTGATGCGGGTGGGCCCGAACACTTCTCAGGCCGCACTTCGCCCGGTATGGGAGAGGCCGATCGCCTCTGCCAACGGCACGGTGGCCGCCATCGGGCACGACCTGGAGCGTATCGACAGCGACCTCCAGGTCATCAGGAGCGATACCCCAGCCTTGCGACGACAGCTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 172-2165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPJ010000003.1 Nocardia farcinica strain BJ06-0096 NODE_4_length_386707_cov_30.011622, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 172 29 100.0 32 ............................. TCCGGCACGCTGACGAGGGTCGCGGCGACGAC 233 29 100.0 32 ............................. CGCCACCAGCGCGAGCCGCACCTGCGGCGGCA 294 29 100.0 32 ............................. GGCCCGATGTCGTCGACGCGCCACCGCAGCAA 355 29 100.0 32 ............................. TGTTCCGGCGCAATGGCGCTACGACTGGCTGC 416 29 100.0 32 ............................. TTCGCCTCGATCCGCGCGAGCGCCTGCGCCGA 477 29 100.0 32 ............................. TCTTCGGCTTTCGCGCGGTCGAGGAATAGGCG 538 29 100.0 32 ............................. GCGTTGCGGAACCGGATGAACGACTCCCCGGT 599 29 100.0 32 ............................. GCGGGCGACAAGATCGACCCCGTGGTCGCCCT 660 29 100.0 32 ............................. CGTGCACCGCGGGGGCGAACTCGTCGGTCACG 721 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACT 782 29 100.0 32 ............................. GGCGCCGACGGGTCGCGCTGGAACCTCACCGA 843 29 100.0 32 ............................. TGCTCGATTGCGGCGTACCGCAGATGGGCGGT 904 29 100.0 32 ............................. ATCGCCGCCTCGCTGCGCTACACGGTGAGCCG 965 29 96.6 32 ............................G CTCCAGGCCCTCGATCCCCATCTCGCCGAGAA 1026 29 100.0 32 ............................. GTGACAAACGTCCGGGCTGAATCGGCAGACGG 1087 29 100.0 32 ............................. GACGCACTGGACCGTGTGAGATTCCAGCGAAT 1148 29 100.0 32 ............................. TGCGCCGGGCAAACGGCGGTCGATACGTCCCG 1209 29 100.0 32 ............................. ATGTGTTCGACAGGTTTGCCCAGAGATCGCGA 1270 29 100.0 32 ............................. AACGGCAGGGCCCGCTGGGGCGATCAGGAATA 1331 29 100.0 32 ............................. CAGCTCGGCAGCACCGCGAGGATCTGCTCTCG 1392 29 100.0 32 ............................. GGCTTGCCGCCGCCTTTCTCCAGCGTGGCGTC 1453 29 96.6 32 ............................G CCTTCGGCAGTCGTACGTATTGCTCGGCGCAT 1514 29 100.0 32 ............................. GTGCGCACGGCGGCCAGTTTCTTGCTCAGCGA 1575 29 100.0 32 ............................. CAGCCCTTCACGGTGTCGATCGCGCTGCCGAG 1636 29 100.0 32 ............................. TGCCCGTAGTAGTGCCGTGCCATGCCGCGAGG 1697 29 100.0 32 ............................. GGGTCGAACCACCGAAAATCCAAGCAGGGGTT 1758 29 100.0 32 ............................. TGTCATGTCGGGTCGTCTTCATCCTGGTGGCC 1819 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 1880 29 100.0 32 ............................. GCATCGGCGGTCGCCCTCGAAGCGCTGTCCAC 1941 28 96.6 32 ....................-........ CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 2001 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTCACAGCGGTACCA 2062 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTTGAC 2138 28 72.4 0 A..T....G..A..T..-C........A. | ========== ====== ====== ====== ============================= =============================================== ================== 33 29 98.8 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTACCACCGGCGGCGCCGGCAGACCGGCCTCGGGCGTTTGACGCCCGTCGAATACGAAGTAATCATGACCCCACCGGCCAGTCAGGCCGCGTGACCGAACCTGTCACCGAATCCTGCATCAGTCCCGGGGATGAGCCCGCTTGCTTCCATTGTTCACTACCTCCAATGGTG # Right flank : CGGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCACTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11350-14533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPJ010000003.1 Nocardia farcinica strain BJ06-0096 NODE_4_length_386707_cov_30.011622, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 11350 28 100.0 33 ............................ CTGCCGGTGCGCGAGCGCGTGAAGTCCCTCGGC 11411 28 100.0 33 ............................ CGCCGATCATTCTCGACGCCGGGCAGTGCTGGG 11472 28 100.0 33 ............................ CGCCCAGCTGCCTTCGGGCTTGTAGCCGCCGTT 11533 28 100.0 33 ............................ CCCCTGTGAGCCAGCTAACTTTTCGCGATTACC 11594 28 100.0 33 ............................ CTGCTCCTCGCTCATGCCGGCCGCGATCGCCTT 11655 28 100.0 33 ............................ CTTCAAGGACATCGCCCTGTCCTACAAGGACGT 11716 28 100.0 33 ............................ CATGTGCACTCGCGCCGCCCTGTAAGCGGCCAA 11777 28 100.0 34 ............................ CCGGTTCGGCACCTACCTACGTGAGTGCTCGGTG 11839 28 100.0 33 ............................ CGAGAGACGGCAGCGAGCGAGACGAGACATGTA 11900 28 100.0 33 ............................ CAATGTTTCCTTATCGTCTGATCCTCACCGGAA 11961 28 100.0 33 ............................ TTGGGCAAGGGCGACTACACGGTGTTCGTCGAC 12022 28 100.0 33 ............................ CGGCAGTTCCACCTCCGCCGCCGCGCATGCAGC 12083 28 100.0 33 ............................ CAGCACGATGCCAACGGGAAGTTCCTATATTTG 12144 28 100.0 33 ............................ CGGTCGAGTTAAGCCCCGTGTCTACAGTCCTCC 12205 28 100.0 33 ............................ CGAAGTGCAATGCGAGATTGGCAAAACGTGTCA 12266 28 100.0 33 ............................ CTGAACAATCTTCTGCGCCAACGAATCAAAGGA 12327 28 100.0 33 ............................ CAATTCCTGGTCCTTGTCGGCGGTCGCGGCCCT 12388 28 100.0 33 ............................ CTACGGCAGCATCCACCGGTACATCCTCGGGGC 12449 28 100.0 33 ............................ CATCTACCTGGCCACCGCGATCGGCGCGAACAC 12510 28 100.0 33 ............................ CGGCCAGAACAAGACCAAGGTCGGTGGCGCCGT 12571 28 100.0 33 ............................ CGGGGGCTCGATGACCTGGTTGCGGCAGGTGTG 12632 28 100.0 33 ............................ CACCGTGATCAACAGATCCCGCACCTCGGCATC 12693 28 100.0 33 ............................ CCGGCGCACCGCCTAGGCGTGTGTCGGCTGGAC 12754 28 100.0 33 ............................ ATCGCGGCGTTCGCCGACCAGATGCGGCCGGTG 12815 28 100.0 33 ............................ CCGGCCGACGGCCGGGGTGTCGAGCAGTGCGGG 12876 28 100.0 33 ............................ CCGTTGACCGATTACACGATCAAGCGCGACTAC 12937 28 100.0 33 ............................ CCCGGAGGAGCCGGACATGAACGACCAGTGGAC 12998 28 100.0 33 ............................ CGATGCAGCCCTGGAACGGGACCGTCCAACCGT 13059 28 100.0 33 ............................ CGTTGGAGGGGTGGAGTCGAATCCATCTGAGAT 13120 28 100.0 32 ............................ CCCCCGCCATAGACCATTGGTACTCGCTCCAC 13180 28 100.0 33 ............................ CGGTTTTCGAGGCGATTTCACGGAGACGGACAA 13241 28 100.0 33 ............................ CCGGGCACGGTCAGGGTGCTCGAAAGTAAGCGA 13302 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 13363 28 100.0 33 ............................ TGGCTCGCGTCGTCGTACGGCCAGGCCACCGCA 13424 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 13485 28 100.0 33 ............................ CTTCTCCACGCGGGAGAGAGCGGCGATGGTGTC 13546 28 100.0 33 ............................ GGCCCTGCTCGACCGCATCGAGCACCTGGCCGT 13607 28 100.0 33 ............................ CCGGAGGACATCATGGCCCAGTACAACGTCGAC 13668 28 100.0 33 ............................ TGTTTCCGGTACTTCCGCAGGACCGGGGGTATT 13729 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 13790 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 13852 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 13913 28 100.0 33 ............................ GTCGGGGTCGGCGGTGTTGTGGCCCCACAGCAG 13974 28 100.0 33 ............................ CCGGACGGCGGCCGGGGTGTCGAGCAGTGCGGG 14035 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 14097 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 14158 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 14218 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 14279 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 14505 28 71.4 0 ...G..TG.....CG.TC..A....... | G [14532] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 50 28 99.4 36 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 128255-129563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPJ010000003.1 Nocardia farcinica strain BJ06-0096 NODE_4_length_386707_cov_30.011622, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 128255 28 100.0 33 ............................ CGCCTGGACGAGCGTTTCCATCACTACCTGCTG 128316 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 128377 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 128438 28 100.0 33 ............................ CTGCTCGATTGCGGCGTACCGCAGATGGGCGGT 128499 28 100.0 33 ............................ CAGCGAGCCGATCCTGACCAGGATGTCGCCAGT 128560 28 100.0 33 ............................ CTCTATGCGGACCGGCCAGTGGCGGAGTGGCAG 128621 28 100.0 33 ............................ CTCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 128682 28 100.0 33 ............................ CACCGCCGACTGGGGCTGCATCGTGTGCGGGTC 128743 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 128804 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 128865 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 128926 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 128987 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 129048 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 129109 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 129170 28 100.0 33 ............................ CACGGTGCGCGAGCAGCACGCCCAGGCAGCGAC 129231 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 129292 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 129353 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 129414 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 129475 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 129536 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTTCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCGTTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1413-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPJ010000030.1 Nocardia farcinica strain BJ06-0096 NODE_84_length_58676_cov_30.672616, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1412 28 100.0 33 ............................ CACCGCGGTCTTGGCCGACGCCATCTACAACGA 1351 28 100.0 33 ............................ CCCGACGTACGCGGGCCTGCGGACGTATCAGGG 1290 28 100.0 33 ............................ CGACCTCGGAGTCTCGACCTCGACGATCAAGCG 1229 28 100.0 33 ............................ CGGCAGCACCAACCCGTTGACCTCCGGCGGGAT 1168 28 100.0 33 ............................ CGATCGCCGCGACGACCCACCATGACGCCCGAC 1107 28 100.0 33 ............................ CAGCGATGTCGAGGCCTACGTGCGGATCTCGTC 1046 28 100.0 33 ............................ CGCCGCGCCCTGCCCGACTTCACCGACGTCGCG 985 28 100.0 33 ............................ CCCTTGGTTAACAAGGGGATTTGGTACGGGCCG 924 28 100.0 33 ............................ CGCGTTGATGATCTGGAACGGGCGCACGTTCGA 863 28 100.0 33 ............................ CTTCAAGAACATCGCCCTGTCCTACAAGGACGT 802 28 100.0 33 ............................ CCCTGCGAGCGACGACCGAGTCCCGCAGCAGCA 741 28 100.0 33 ............................ CTCGGCGTACCCGGAGTGCGACCGGTAGGGGGT 680 28 100.0 33 ............................ CCAACCCCAGGTGCCCGGCACGCGGGTCGACCA 619 28 100.0 33 ............................ CCCGAACTCGTGGACATGGACGGTCAGCTTCGA 558 28 100.0 33 ............................ CCGACATCGAATATGGTGATTTACTGCGACCCA 497 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 436 28 100.0 33 ............................ GTGCCCAATCGGCGCAGCGCTGGCAGGCGTGGG 375 28 100.0 33 ............................ GGTGGCCGCCCCTTACCCGGTCACCAAGCAACG 314 28 96.4 33 ...........A................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 253 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [200] 199 27 85.7 0 ........A.T....A....-....... | A [190] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGAAGAGCGCGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGGCTGTGTTTCCACGTTCCGAGAGTGCTATTACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGTCTGTCCGGTCGACATCTCCTGCGATTCTGACGGTGTGGGTCTGGGCGAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACTTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGATTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4354-3655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPJ010000030.1 Nocardia farcinica strain BJ06-0096 NODE_84_length_58676_cov_30.672616, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4353 28 100.0 33 ............................ CGCCGGGATTTGATCGACAGCGAGATCCTCGAC 4292 28 100.0 33 ............................ CTTGCGGATGCTGTGCGCGAAGTCGACGGGGTC 4231 28 100.0 33 ............................ CCCCGACGACCAGGCCGTGCGCTCACAGGTCAA 4170 28 100.0 33 ............................ CATGACGCACCAACTCGGTAGCGCGTGCACGGA 4109 28 100.0 33 ............................ CCTGAGCCGCACACTGAGCAAGGCCTCGATCCC 4048 28 100.0 33 ............................ CGACGGCACCGTGCTGGAATTCGGGGAGTACAC 3987 28 100.0 33 ............................ CGCGCACGCGTCGGGTTGGGCGTGACGCGCCCA 3926 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 3865 28 100.0 33 ............................ CGGCGAGCTGGCGATCCGGGAAGCGCGCAGTTT 3804 28 100.0 33 ............................ CACCAGGTTGTAGTCCGGATCGGAATCCGGGCC 3743 28 100.0 33 ............................ CACACGCTCGACACGGCGCACGGCCGCGGCGCG 3682 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGACACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : TCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //