Array 1 503500-502173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGCE010000003.1 Providencia stuartii strain M2 NODE_3_length_568993_cov_34.654087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================================================================================== ================== 503499 28 100.0 32 ............................ GTAATGAAATGGTTAGGAGAAAGGATCTTAAA 503439 28 100.0 32 ............................ TTTATATTTACGGTTAATAGGTAGTGCATCAC 503379 28 100.0 32 ............................ TACCGGAACAGTAACTAAACTTAGGATATAAA 503319 28 100.0 32 ............................ GCATACAGATTTAAAAATTAGATATCGTCGTT 503259 28 100.0 32 ............................ TTATAAACTGTGTGGAGTGCTTAGGATGGGAA 503199 28 100.0 32 ............................ AAAAAGTTCAGCACAAAGAAGCATCGCATGTT 503139 28 100.0 32 ............................ TATCGATGATTCTGGTTGGATACAGCCTCCTG 503079 28 100.0 32 ............................ TACAGGCCACCGTACAACTGTCCGCACAGGTT 503019 28 100.0 32 ............................ GTTAATATATGCGCCAGTATTGTTTTCATTCG 502959 28 100.0 32 ............................ GAAGGACAGAGACGCTTGCGGCTCTGCGGAAA 502899 28 96.4 32 ...........T................ ACCCTGATAGCGAAAATAAGGGACGTTAAATA 502839 28 100.0 32 ............................ AACGTATAGTGCAAATCTTTCGCGGTGATAGC 502779 28 100.0 32 ............................ ATAATCCAAGCTGCAGCATCTTCTTGCGACAT 502719 28 100.0 32 ............................ AAGAATAGCAATAAATGGTGCTGAATTGGGAT 502659 28 100.0 32 ............................ TGCAAACATTGAACATATCGGCAACTATATGA 502599 28 100.0 32 ............................ AGCAATAAATGCATCACGAAATTCAATCACAT 502539 28 100.0 32 ............................ CACCAGCCGCCCATTTTCACAGTTGAATATTT 502479 28 100.0 32 ............................ AAAACAGAGCTATTTCTTTGTCACTTAAATAG 502419 28 85.7 191 .....................C...TGC TACGGCTTAGAAGGCCGTTGTTCACACTTCAATTTATCCATCATTGTTCGCTGAACAATAATTAAATCCATCTATTTATAATTGATATTTATTTAAGCGAACTTCTTTATTAGGTTAGTGATGCGTTTAACGCGAGATATATCTTGCTACTATCACTCGATAGCTTAGAAATGAAACAAGATACGGGTATT 502200 28 71.4 0 TA........ATG.......T..C...C | ========== ====== ====== ====== ============================ =============================================================================================================================================================================================== ================== 20 28 97.7 40 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATTAAGTCAATTCAGCAGGTTCCCGAGCAATCTGTGCCTGTGAGTTATATTCGGCGCCATGTGAAAGGGAAAAGGCGAATAGAGGCAGATATGCAGAAAAAAGCGCAGCTATGGTCGGCGAAAACAGGGCAATCGTTGGATACCAGTTTAGAGGCGTTATCCAAAAGCAAGCCTAGAGCCAACAATCGCTTACCCTTTATTTGGGTTGAAAGTTTACACACCAAGCAAACTGAGGCGGGCGGGCGACCTTTTCCGTTGTTTATTGAAAGGGTGGAGTCAGCACAAGAGCAAAAAGGGCCATTTAATTGCTATGGTTTAAGCCAAGTAACGAATGGCTTAAATTTGGTTGCAACGGTTCCTCATTTTTGACCTTTATTTTTTGCTCTTTAAAAATTGAATTTAAAATCAATAAGTTATAATGTGGGTGAAATAAAAGGGTATTTTTAAATAAATACCCTTAACGCATTGTTATCACATATTTTTTGCTTTGAAGTTTATA # Right flank : ATAGTAGTAAACCTGAAAAAAGAGACGGGTTTTAACTACTTTAATGAGGGGAATTATATGGAAATTATCATCAATTTTTCTTGGGTTACATTAATTATCAGATTCACAAAGTGGTACTGATAATGAACTAATGCTGATTGACCGAGTATCGACACTCAAACAAACAAATTAAACATCAGCGAGAGCTGCTCAAATGCTTGGTGGATAAGCCGTTCGGTGTAGCGGGGGAGAATTGAAATAATCAACCCTAACATACTGATGCCAATGGTCAGTGTCAGTGGGAAGCCGACCACAAATACCGACAGTTGTGGAGTCATACGGTTTAAAATACCCAGCGCAAGGTTAAGAATTAAAAATAAGGTAATAAACGGTAAGGCTAACATTAACCCATTAATAAATATGGTGTTGGCGAATTGAGCGAATACCCAAAAACCGTCGCGATTTAATGGTGCGGTTTGAATTGGGATAAGCTCAAATGAATTGACCACAATATAAATAAG # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.78, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 513327-512158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGCE010000003.1 Providencia stuartii strain M2 NODE_3_length_568993_cov_34.654087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 513326 28 100.0 32 ............................ TGAAGTATACGAATATCTGTGCGAAACTGGTC 513266 28 100.0 32 ............................ AATAGACACGCGGTATGCGTTCAATATAAAGT 513206 28 100.0 32 ............................ TGAAGATTTACGCTCGGCGTCGTCTAATGACC 513146 28 100.0 32 ............................ AATTTCTGAAGCTGATGATATTCATCTAGAAA 513086 28 100.0 32 ............................ TGATGCTAAACCGTGGGGTAACGGATCTATTT 513026 28 100.0 32 ............................ ATATCAGCTAACAATGGATCTGATTCTATTAA 512966 28 100.0 32 ............................ CCGGTACACTGGTTTTGCTTTTACCGGAAAGG 512906 28 100.0 32 ............................ CGATTCTTCCACGGCTTGCCAATCATCTTGTT 512846 28 100.0 32 ............................ TATAGTAAAGTACAACCAGTGCCCAACAATCG 512786 28 100.0 32 ............................ TAGCACGCGTAAAGTAAACAATAAGCCGTTAA 512726 28 100.0 32 ............................ ATTCATTCTTGAATAAACAGATTTAGGAATAT 512666 28 100.0 32 ............................ AACGCTTAAATTAGCGGTTAAGTTCGTGCTGT 512606 28 100.0 32 ............................ TGTACGAACTCCATGTATATCACCGATGGAAC 512546 28 100.0 32 ............................ TCATTATGATACCCGCTTACCTTCTCCGCTAA 512486 28 100.0 32 ............................ GCATATCTGGGGCGTCAACCTTTCTTATGTAA 512426 28 100.0 32 ............................ CAGTGGCTGATGCTCTCATGGTTGTAGCTGAA 512366 28 100.0 32 ............................ GTTTCGTCTATGAGATTAAATTACCAGACGGT 512306 28 100.0 32 ............................ CACTGAAGGTATTTATCATTAGTCCAGCGCTG 512246 28 100.0 32 ............................ TATGGAACTTGAAGTTTATTCAATTCAAGGAA 512186 28 85.7 0 .......................TT.TC | C [512160] ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTAAAGCGGCACTAGACCAAATTTCCAATATTGAAGCAAAACAAGGCTTACAACTACAAGAAATTGATAAGTTGGATTTTTTAGCAGATACGCGTTCAATTCAAAATGCTGCTCGTAAAAGTGAGTTGCTTGAGACTAACTGGACAGGCACCACCACGGATTACTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTCAAAGATTTAAACAGCATGTCTTTATTTGGTAGTCGTTAATCATCTAATACTTGAGTTCTACTCAACCGCGCTTTGCCGTTATTGGAGCGCGGTTTTTTTGTTTTTGGTGATTTTTGGGATCCAACGAAGAATGCTTCAACGAAGTTGTGCTATCTTAAATTTACCCTTTGTTTTTTGTTCTTTAAAAAAGTCTCTTAAAACAATATGTTATAAACTGAGTGTAAAAAGAAGGTATTTTCTTATTTTTATCGGTAACAGGTTGTTGTGATTCACTTTACTTATGATATTTTATA # Right flank : AACACGCTATACCCATAAAAAGTCGTTTTGACTGGGGCTTTTGCCAAGCTCTTCACAAATTTTACTTTAGTACCAACTTTGACTTGTTTAGTGTGGGAATGTAGATTCTAATTGACTGTAAAACATTCAATAAACTTATCAATTTAAAAGGATGTTACGTCATTATGGATGATTTTTCACCATCAGATCTCAAAACCATTTTGCACTCTAAGCGCGCCAATATGTACTACTTAGAACATTGCCGTGTGATGCAAAAAGATGGCAGGGTGCTGTATTTCACTGAAGCGAAAAATGAAAACCTGTATTTTAATATTCCTATTGCGAATACCACGGTTATTTTGCTCGGAACAGGAACGTCTATTACCCAAGCGGCGATGCGAATGCTATCCCAAGCGGGGGTTTTAGTCGGGTTTTGTGGTGGTGGCGGGACACCGTTATATATGTCTACAGAAGTGGAGTGGATGACACCTCAAGGGGAATATCGACCAACAGAATATCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //