Array 1 366-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGRU01000031.1 Klebsiella sp. Kd70 TUC-EEAOC contig00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 365 29 100.0 32 ............................. CCACTTGCACCGACTTTATTAGGGGCAGACAG 304 29 100.0 32 ............................. ACGGCACCGCAACGCAGTATGACAGCGAGAAA 243 29 100.0 32 ............................. CCTATGAAGTCAGCAACCTCGGACGGGTCCGC 182 29 100.0 32 ............................. GCAAATCCGGCTGTGGCCATGCTGGCCGACGC 121 29 100.0 32 ............................. TTCTCTGACCCATCGGCATTTAATAACGGGGT 60 29 96.6 0 .........A................... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCATACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACTCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTGTTGTGCCTTTTAAAATCAAATAGTTATGGATCTTTAAAAACATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTGGTGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : GACGGCACCGCAACGCAGTATGACAGCGAGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42-437 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGRU01000030.1 Klebsiella sp. Kd70 TUC-EEAOC contig00030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42 29 100.0 32 ............................. CGGGCTTATTTATTTTAGAAACGGCGCCACGA 103 29 100.0 32 ............................. ATTACTATACGGTCTGGAACGCCGGGAACCTA 164 29 96.6 32 .....................G....... CAAATGAAGCCCGGCGATTAGCGCCGCTTTCT 225 29 100.0 32 ............................. GTCCATGATGTTGTGTTTTTTCACCCAGCTGA 286 29 100.0 33 ............................. GCGTCAATCATCAGCGTTTTAACGTCTGCTAGC 348 29 100.0 32 ............................. GCGGTGAACTCAGTTGCAAGTGGGCAGGGTGA 409 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATAAACCGACGGCACCGCAACGCAGTATGACAGCGAGAAAG # Right flank : ACAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCACCCTTATCTTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGATCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 203528-202154 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGRU01000006.1 Klebsiella sp. Kd70 TUC-EEAOC contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 203527 29 96.6 31 ..........................G.. CCGCAGACGGGCGGGACGTGTCTGTCGCTGT A [203500] 203466 29 89.7 32 ..........................GTT TAACGTGCTGGCCAGCCAGCCGGCAGATTTGT 203405 29 93.1 33 ...........................GT GTAAACGAACTATAAATACCAATTCCGCCAGGT 203343 29 96.6 33 ...........................G. GATACGGGCCTTCTTTCCGGCATCACAAATCGT 203281 29 100.0 32 ............................. CTATGACGTCATCCTGACTCCAGGCAGGTTGG 203220 29 100.0 32 ............................. GAAATTCCGGTCCGTCGCGCGCGCAATATCGC 203159 29 100.0 32 ............................. CGAATAAACCGGATCCTTTTCGCCCTGCGTCA 203098 29 96.6 32 ............T................ GCTCGCTAATCAGATAATCCCGCACCTGTCCG 203037 29 96.6 32 ...........................T. AGTTCAAATCCTTTATGGAGGCGATAGGGACG 202976 29 100.0 32 ............................. TGCGCCAGCATACCTGGGACGCACAGACAAAC 202915 29 100.0 32 ............................. CCAGCCCACGAAGTGATTATTTACGCCTATTA 202854 29 100.0 32 ............................. CAGATAGACGATAGAACCATCACTGCGGGTGA 202793 29 100.0 32 ............................. TCTTCAACCATGGGTAGCCTCTTTGCGTAAAG 202732 29 100.0 33 ............................. GTGTCAGGCAACAGGCATCCTGCAAGCGCTGGT 202670 29 100.0 32 ............................. TCCTTCAATCGTCATTTCATGCGCGTAGTAGC 202609 29 100.0 32 ............................. AAATACCTGCAGCAGCGGGTAACGTTCCAGAC 202548 29 100.0 32 ............................. GTGATATTGTGATTGCCGCGGTGGACGGGGAA 202487 29 100.0 32 ............................. ATAACGAGGGCTGGAGTTCTGACGACGGTGGC 202426 29 100.0 32 ............................. CAGCTTTCCAGAATGTAAACGAGACTGTTTAC 202365 29 100.0 32 ............................. CGTCTGGGGAATATCATCAGCATTAATTTGGT 202304 29 100.0 32 ............................. CCAGTAGCGTTTGAGTTTAAGTGTGTACCCTA 202243 29 100.0 32 ............................. CTCCCGCTGGACGCTTCGACATGTCTGCAAAT 202182 29 82.8 0 .....G......TC.......G.T..... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GCTAGCTGCTGGTGAGATTGAGCCGCCTCAGCCAGCGCCAGATATGTTGCCGCCGGCGATACCAGAGCCACAGCGACTCGGCGACGGCGGGCATCGGGGGCATGGCTGATGAGTATGGTAGTTGTTGTTACGGAAAACGTGCCGCCGCGCCTGCGAGGACGGCTTGCCATATGGTTGTTAGAGATTAGGGCTGGCGTCTACGTCGGCGATGTTTCAAAACGTGTGCGGGAGATGATTTGGCAACAGATTACGCAATTAGGCGGCGCTGGAAATGTTGTTATGGCCTGGGCGACGAATACAGAGTCCGGTTTTGAGTTTCAAACTTGGGGAGAAAATCGACGTAGTCCGGTAGATTTGGACGGCCTGAGATTGGTTTCTTTCCTTCCCATTGAAAATCAGTAAGTTATAAGTTCTTTAATAAAAAGGAATTGTAGAACATAAGTTGGTAAATTGTTGCTCTCTGAAAATTGTAATAGAAAACAAATATATATATTTAGAGT # Right flank : GTTTTTTCCCATACGCGCTCCGCATTCAGGGAATGTTCCCCGCGCCGCCATTCTTATTATCCTGTACTTTATTTTTTTACGTCATTATTTAGTGTGGCAAAGTCCAGTTCCAGTCAATACTTGCCAAAATTTTTGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACAGACGTTTTACCGATGCTGGGTTCTGAGCCCAAATCCAACCCGTCGTGCCAGACGCGCTGCCAGATATGAACCTGGTTGTCGGTGATGGACCGCGCGCTGGCAGCCAGTAGTAGAAACAACGGTATTAAAAAGCGAAAACGCATCATGGCGACAGTCCTTGTTGCCAGATTTTATCGTTAGTCTATTTTGAGGTGGGCTTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACATCGCGTCCGCGATGCTCAATCCGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAACTGAAGGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //