Array 1 282640-279861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000001.1 Nostoc sp. FACHB-280 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 282639 36 100.0 36 .................................... TAGCAAGCAAGAATGATGTTAGTGCTTCTGTGTTAA 282567 36 100.0 35 .................................... ATCGTAAGGTTCCGTTCAAGTCCTACGACTTACGG 282496 36 100.0 35 .................................... GTATTTGGGTGGGGACGACCCAGGGTAGCGTAATT 282425 36 100.0 37 .................................... TTCAAATTCGTCAGGTTCAACAAACCTGCCCAAAGTG 282352 36 100.0 36 .................................... TAACTTACGAAGGGCAAACCTTCAAAGACTTAGGCT 282280 36 100.0 36 .................................... AATAGAGGCGGAAAATGTTCTACAGTCTCAGCCCAA 282208 36 100.0 35 .................................... TATTGTTTGCCTTGATTCTTCCCGCTCAATGGAAG 282137 36 100.0 37 .................................... TCTGAATTAAATCGGTTGATGGATGCTGGTAGTAGCG 282064 36 100.0 36 .................................... TGGAAGATGCACGAGAAGCAGACCCGGTGTTTGTTT 281992 36 100.0 35 .................................... CGATATCTGCGGCAAACCGTTAGCACCAGACGGGA 281921 36 100.0 37 .................................... CGGAAGGTTTATAAAAATAACTTCCTGATGCTGATGA 281848 36 100.0 36 .................................... TCATGAGTAGCGCATTGACAGCCTCCGATTTTACTG 281776 36 100.0 37 .................................... GTGGAACAATCGATTGTGGTACACACACAGCATTGAC 281703 36 100.0 40 .................................... ATGCCAAACTAGCCAACTTGGTTAGTCCGTTGGTTAGTTT 281627 36 100.0 37 .................................... AACTAACTCAGGTGCAGATATGAGTAAAGTTTATTTC 281554 36 100.0 36 .................................... GTAATCCAGTAATTAAACGGTTGTAAAATCTTAAGT 281482 36 100.0 36 .................................... AAGCAAGAGCTTACACTATTCTTGATACTAATTCGC 281410 36 100.0 35 .................................... TAGCCTTACCTAATGCACTAGTCGCCGCACTAGTG 281339 36 100.0 35 .................................... TATATTCGGGTCTGTAAGGTCGCACAATTCTACAC 281268 36 100.0 35 .................................... GTTTAGAAGGCGCTATAGATAGCTTAGGCGCTGGT 281197 36 100.0 35 .................................... TTGTCTACTGCACCAAACAGAGTTTGAGCAATATT 281126 36 100.0 36 .................................... AATTTTGCAAATAAATACTTAAATCGCTTGCTATGT 281054 36 100.0 36 .................................... TCCTTCCTCCCCGAAGACATCACCCAGCAACAACTG 280982 36 100.0 37 .................................... AACCACTTGATCAAGAACTAATTCCTGGGGCAGTCAA 280909 36 100.0 35 .................................... TGGAATTGGTTGACTTTGTGAGGGTTAATCCTGGC 280838 36 100.0 36 .................................... GAAGTAGATTTAAATGAGCTATTAGAAGACTAATTC 280766 36 100.0 37 .................................... AAAGTTCAAGGCTTAAATATCTCCCTTGCCACCAATG 280693 36 100.0 37 .................................... TATCTACGATTGGTAGATTAGCAGATGTTAAGCGTTT 280620 36 100.0 36 .................................... GTGAAGTGCTTGGGGAATACGGCGGAGAAATTATCA 280548 36 100.0 36 .................................... ATACAGCAAAAAAAATAATTTGGAAATTAAATTTTT 280476 36 100.0 36 .................................... TAGTCAAGAGTTGCTACGTATATTCACTGACCCTTG 280404 36 100.0 35 .................................... ATTGGGAATAGCTCAACCATTTGCAACAGCGCCCA 280333 36 100.0 36 .................................... CAGAAAAAATGAGCGCCTTTAACCCACTGCCAGTTG 280261 36 100.0 42 .................................... GGCCTGGCCCGCCCATTGCTTCTGCGATCGTCCCAGCACCGA 280183 36 100.0 35 .................................... TCGAGGGTTATGGCAACGAAAGATGAACAAGTTAT 280112 36 100.0 37 .................................... GCTTTTCGTAGGGATGAGTACGTAGTATTCGATGAGC 280039 36 100.0 36 .................................... TAAGTTCGTAAGTTCAAATCATCCCGCCATTCTCCA 279967 36 100.0 35 .................................... ATTGATAGAGTAACTTGTAGTTGAAACAATAGCCA 279896 36 91.7 0 ....C.............T...........A..... | ========== ====== ====== ====== ==================================== ========================================== ================== 39 36 99.8 36 CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : GGCTTACAACTTACTCCAAGGATATGGCGAAAGGATGCAATACTCTATTTTCCGTTCTTGGTTGACCATGCGATCGCGCGAAAAATTGCGTTGGGAACTTGAGAAAATTCTCGCCCCAGAAGACAGTCTGTTATTAATTCGGCTGTCAAATCAGTGCGTTAATTCTATTCCGGCTTACAATCGTCCTGGTGCTTGGTCAAATCAAGAAGAACCTTACCGGATTGTCTAAAAACATGGATCTGAGTTTGTGGAACATGAAATAAAACTCAAACAGGATAAAAACCTTACTGGGCTTGCTTTTGAGCTTTTTTAGGTGAACAGGAGGTGCTTGCATTTTTTTGCGTGAGGTCAAAACCTAGTCCTGGTAAGCGTTCTAAGTTGAGACGGAAACTTGAAAGTTAAACTTTTGGTAAGCAATTGACTTCTTTTGTTGCTTTTTTACCTAGATGCTTGCAAAATAGCAACTGAGTGGTCTGATGACATGGGTTTGAGCGATCGCT # Right flank : GACAATAACTATCAGCTGTCAACGAAACTTTTTGTAATTAGTTTTGTCTATAAGATTAATTCATTAGTTTATCAGGAAATTATATGCGATCGCCTATCGTAATCGGTACAGGGTTGCTTGTATCTATAATTTTGAATGCCCAAGTATTCGCACAATCTACGGTTAATTTACCACAAATAACTGCCCAGAACTCGTCGCAACAAATCTTAAATCAAAATAATAAAAAGACAAACTCAGGGCTGATTACTCTACAAAGAACAGCCTGCTTTGGTGCTTGTCCTATTTATAAAATTACCATCTTTCCTGATGGGAGAGTTGTCTACGAAGGGGAGCGTTTTGTGAAAGTTGTCGGTAAAAGAACTGCCAGAATTAGTCCCCAAGCAGTCAGAAGATTAGTTGCAGAATTTAATAAGGTAAACTATTTTTCATTAGCAAATAGCTATCAAGGTGGACGGACAGATGCGCCTTCTGCAATTACTTCTTTAACTATCGGTAAACGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 5041-5369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000093.1 Nostoc sp. FACHB-280 contig93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 5041 36 94.4 37 ............................A...T... CAATTGAAAAGCATCATAACCATCTCTATGATACTCG 5114 36 100.0 37 .................................... TATAAATGCTCTAGTATCTTTAGTTATTTCTAACTTA 5187 36 97.2 38 .........T.......................... CAAAATAAGGTCTTTAATTTCATCATCCACATTCCAAC 5261 36 97.2 37 ..................T................. CATTTTCTGTGGTTGTTTGCTACCAAAAAATATTGTG 5334 36 86.1 0 .........A...........G..A.....C.A... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 95.0 38 GTTTCTAACCACTAATTCCCCTCACGGGGATTGAAA # Left flank : AAATTAGCTCCTAATAATTCCACCGCTAAACGTCGTGCTGAATCTTTACGCCGTTTAGTTTCTGCATAGTTCAGGATTTGCGTAAAAAGATGGGTGAAATCCAGTCAAAAGTCAAAAGTTAAAAGTCAAAAATTCTCTGAGTTTTGAATTTTGACTTCCCCGTAGGGGTGTAGGGGTGAAAAATCTGATCAACTTGTGTTGATTGCTTAAACAGCTAAAATTGTTTCTACTCCTACACCCTACTATTAGTACTCGACAAACCTGACTGGTCACTGTATCATGTTTGTATTAACTTGATGGTTGACAAATCAAAGCGGGGGCTAAAAACCCTGGGGATTCGTCAAAATCGCCAGAACCTCGACAACAAAATAATTACAGCGTTTCATATATCTGGTAAGTTGAGAATTAGTCGCAATTATGACGGCTGAAATTGACCTTTTTTGAGATTCGTCAAATTGCTTCCCAAAAACCTTGCTCTGTATCCATTTCAGTACAGTGCA # Right flank : ATAAATTGTCCGATCGCAAAATCTATCGGTTTTCTATAAGACTAATATTTGCGCCTACACAAATACATTCAGCAATCAAACCGGATTTATATAGTTCATACTGAGAAATGAATAAATAGAAGTTCTTTGTTTGCTAGTTACAGATGATGAAAAAACTGCGGTTTGCTGTTTTAGCCATTAATATTATTATTTGCCTGAGTATATTTTTTGGACTAATAAGTAAAGTCTCTGCTCAACAACCGCAGATTTTGCACCCTCTAACGCCGTTAACAGAAACAGAAATTACCACAGCCGTTGAGGTAGTTAAAAAAGCAAAATCGTTAAGCGATATGGCTATTTTTTCGATTGTCGCTTTAAAAGAACCTGATAAACAGGAAGTTTTAAATTTCACACCCAATCAAGAAGTTCAACGACAAGCTTTTTTAGTAGTATACGAACGTTTACAAAACAAAACCTACGAAGGTATTGTTGACGTAAAAAAGCAGTCCCTCAATTCTTGG # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAACCACTAATTCCCCTCACGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 164179-162009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000012.1 Nostoc sp. FACHB-280 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 164178 37 100.0 41 ..................................... GCTTGTAACCTTGGGCAAGGTTCGTAAGTACCTGATTAATA 164100 37 100.0 33 ..................................... GCGGTTTTTGCGAGATCACGGCACAGTTGTCAA 164030 37 100.0 34 ..................................... GGTATCCATCCTCAAAAGCATGGGCGGCATTTTC 163959 37 100.0 42 ..................................... CCGAAGCAAAATGATAAATGCCAGTTCTGGGATGATTCGGCA 163880 37 100.0 34 ..................................... ATTTGCTGTTATTGTGTCACGGCTGCATCGACTG 163809 37 100.0 35 ..................................... AAAAGTCCCCAGTTCCGGCGAATGGTTAGAACGTC 163737 37 100.0 43 ..................................... ATTGGCTATAGCCGTAAAAATTTAGCTATAGTTTATGGTTCAA 163657 37 100.0 36 ..................................... TCATTAGAAGTACCAACCAAAACGCATTGTCTTGGA 163584 37 100.0 39 ..................................... ACTCAAATCCCGCTTGATGTAATCAATGCGACAACCGAA 163508 37 100.0 34 ..................................... CAGCAACCCTGAACTTAAATATTCTTGAGATAGA 163437 37 100.0 36 ..................................... TGCGGAGATTTCAAGAAAAATGGTGTAAGGTACAAT 163364 37 100.0 36 ..................................... ATCAATGGCACTTTTTGTGCCATTCTTAGCAATTGT 163291 37 100.0 34 ..................................... GAGAGTGATCACTTTACACTTGCTCATGCCAAAT 163220 37 100.0 36 ..................................... TTATCAATCCATCACAGCTAAGACTTCACCTGAGAA 163147 37 100.0 35 ..................................... ATTAAAATCCTGAATAGCCTTAATTTGGATATTTC 163075 37 100.0 38 ..................................... AAATTTACTATCGTTGTTGATGTGGTCAATGACCAAAG 163000 37 100.0 35 ..................................... AATAGTACTATAAAAGTTCCTCTCTAAGTTCGGAG 162928 37 100.0 36 ..................................... TGTTTAGCTCAATCGGATCAGGTAATCCAAACTACA 162855 37 100.0 35 ..................................... CCTGGCGATATCGGGCAATTGCCGGCTCTTGATGC 162783 37 100.0 31 ..................................... CTTGCAGATTTAGCATAGCTTCCAGCCCGCT 162715 37 100.0 32 ..................................... CAGCTTCACCTTTAGCTGTCCACAAAGGACAT 162646 37 100.0 35 ..................................... CAAAATTTGGAACAGAAACCAAAGTAGTAAGAGTA 162574 37 100.0 41 ..................................... GTTTCTCAACTTTAGCCTTTTGCTTCTTAGCTTCTGCTAGG 162496 37 100.0 42 ..................................... ATAACTTTTCCCCAGTGAAGAAAGTGGGGAGGAATTTCACAG 162417 37 100.0 41 ..................................... TTGACCGCTACAAAATTGGCTATACCAACAGAAAATTTGAA 162339 37 100.0 35 ..................................... AACTTCATACCGACGGTAAATCCATCCGATATGGG 162267 37 100.0 33 ..................................... TATATGTGTAGATGGATTTAATTGAACACAATT 162197 37 100.0 37 ..................................... CGGGAGCAAGATAACCAAGATACTCAGCAAGCCTCAA 162123 37 100.0 41 ..................................... GCGATTGCCGCTCAAATCCGCAAAACCAAAGTTTACCTTTA 162045 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 30 37 100.0 37 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : CCAGCCACCCCCAATCAGTTATCAGAAAAGCCACTTCCCAAACGCGAACCCGTCAAACATTTACTCATCGGTTCAGCGCCAGCCGTCACCATCACCATTCATCGTTTGCACCTCATTGGTTACGCCAGCGTTGGCGACTGGAGTCCACTTTTACCAACCGCCAACCCTGATGAAGTCATGAGTATTTTAATTCGCCAACTCTTGATGTAATATCTAGATCCCCGACTTTCTCAAAAGGTCGGGGATTTGAACACCATGACAAATTTAGTCAAAATGCGCGGATAGATAGGTGTACAAAATCGCCCTTGAGTAAGAATGGCTGGATGGCTTAGAGGGTAAGGTTTTGCAGAAAAAATTAATTAAAAATATCCGCGCGGCTTATACAGTATAGGTTTCAGCAATTTAGCGTAAATCGATTGACATTACACCATGTTAAAATTATCCCATCCGCGAAACCGCACCTTGAAAACTAAATACAGTAAGCTTTTCCGGCTCCCGCG # Right flank : TTAGATGGATACTAATATTTAATAAATTTACTGGGTATTACAATTCAAACTCTTATAACTTCGTGTCCTACCTTGCGAGAAGCCGCTATCGCGTCTCTGCGTCCTTTGCGGTTCGTTTATTCCTTAATTAGAGCTAGATTATTCATCCCAGGCTTGCTTCGTGTCCTTTGCGATTCGTTTATTCGTAATTTTGCGTAAGTCTTGTAATGTATCGGCAGGTTGACGAGATAATTCACAGATTGATAATAATTTAGGTAAAATGCCCCTAAGAATTAAGAATTAGATTCACATTATCCGGAAAATGCTAAATTATTTTGTATTTATAATTGTTCTTTGTAAAAGCAGTCAAACCCACTGATGAATCGGTTGACTAAACATTGGATTATTTACTTAATAGCTTTAGAATTTATACTTTGTTTAACAGTATTTACTCTACCTTCTTTTTCATTTTATGCTCAACCAAAAAACCAACCAATGGTTACAGAAATTCGAGGTGTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 109859-109245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000016.1 Nostoc sp. FACHB-280 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 109858 37 100.0 35 ..................................... ACTGGACTTTCGATGATTTCGCACAAGTGCGTGAC 109786 37 100.0 37 ..................................... TTGAATGCTTTGGGCTATGGCAGCCTACAAGATTACC 109712 37 100.0 34 ..................................... TATTGAGTGACACGGTATCACCTGCTGCTTTCCC 109641 37 100.0 37 ..................................... TGGCTATGTGGTCAAGGTGCAAAGGTGTGAAGGTGTG 109567 37 100.0 34 ..................................... TCCGCAGTTTCACGCATCTGTAGGTAGCGATACC 109496 37 97.3 35 ...A................................. GCCATCATTACGTAGAAAAATACAAGTATTTGCAG 109424 37 100.0 35 ..................................... CATTGTATGTGAACGCCTTCATTTTTGCTTGGGTG 109352 37 100.0 34 ..................................... AGTAGCAGTCAGCGCAATTGTGAATAAGGCAGCG 109281 37 91.9 0 .............................A..T...A | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 98.8 35 GTTGCAACCGTCCTCTCAGCAATGGGAGGGTTGAAAG # Left flank : GAATTAGCCCTCTGTGCTTATAATCTCCGCCTAACTAAGCGAAGTTGACAAATATCTGAACCTTGATAATGGAATAATATTTAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTGAACTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTTTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTATCTTCGGATAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGTTGTAGTGGCTACCCAATCACCCCCGACCAAGGGGGGAACCCTCCCCAATTCTTTATTTGACGCACCAAAGACAGGTTAAAATTCTGCTCTTGGTTCGCGCAAATCCTGAAAACCTAATCCTACAAGGAATTTTAGTTAGAAATTTTTTTTGTAGACAATTCAAAAATTAAATCCTGGGAGGATTTTCGAGAAGGTTGGCGCAAGTCGGATCTGAAAACCCTTATATGAAAGGGTTAAAGATGGCAGCC # Right flank : ATCTGTTAGATGTGGGATTAGTGTTAGGTTTCAGTACTTGTTAAAGTTAGGGCGGGTTGAAAGCAAGTCCCTTCACCCCCTCGTTCTAGTTGCTTTGTATAATAATTACATAGTGAACTGTTGGCGACATGAATTTGTCACCACTAACCTAGAGAAATATAATTTGTCACAACGACAGTTAATTTGGCTCAATGACAACAATTTGTCACTGATGACAAATAATTAGTCACTGTACATTAGGTGATACTAAGCAGGCTTTGTTTAACTTTGTTTTTAGTGGGGGTGGAGGGACTTGAACCCTCACGACCGTTTAAGGTCAACGGATTTTCATTCTCTTGCAGCTTTCACTACTACCTAGGATTTTTAATTACCTTTTGGTTTTGAGAATTGGACTCTCCCTTTACCCTCGCCTTTACGTTAGGGTAGCTCCCGTCGAGTCTCTGCACCTTCCTAAAACTTCGAGTATTTCAACTCAGTAATTGCTTTAGGCTTGGCTCAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCGTCCTCTCAGCAATGGGAGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 112250-112423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000019.1 Nostoc sp. FACHB-280 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 112250 32 100.0 39 ................................ CTAAATCGCAGCAAGTGGGCGTTCATATATACTACTTTC 112321 32 100.0 40 ................................ GTGGGCAATTTAAGCAACTCTTGCTTACCTGCTTTCTTTC 112393 31 71.9 0 .................-.TT.C.ACA.T..A | ========== ====== ====== ====== ================================ ======================================== ================== 3 32 90.6 40 AACCCACCCAGTACCTGGAGGGTTGTTGCCAC # Left flank : ACGTGTGGGAGTTATCTAGTTTCCTTGCTAGTCTATGAGGGTGAAGTATACATAATTAATTATTTAAACTTCATCCTTTTAGTGTTTCTCTTCCTGGAAGAATATGCTATACTAGGATAGTTGACTGATGCGGATGTGGCGGAATTGGCAGACGCGCTAGATTTAGGTTCTAGTTCCGAGAGGAGTGAAGGTTCAAGTCCTTTCATCCGCACTAAGTGTAAAAAAGCTATAAATAAAAGGTTTCAGGGGAATCTGTACAGTGACACATTGTTTGTCATCGGTGACAAATTAATGTCATTGTGACTATTTAATTGTCGTCGTAACCCATTAGCGTTTCTTAATTAATTGATGACAAATTAAATGTCATCAATAATATAATATGCTCTGCAATTATTATACAAAGTAATTAAAACAAGCGGATGAAAGGACTTGCTTTCAACCCACCCCTAAATTTAATAGTTACTAAAACCCAAAACTAATCTCGGTTTAAAAGATTTTGA # Right flank : AACTAACCCTCATTTAACACAGTTCAGAGGTTGCAAGCAGCATGAACTGCGGCGCTATTAAATATTATTCCATTATCAAGGTTCAGATATTTGTCAACTTCGCTTAGTTAGGCGGAGATTATAAGCACACAAGGCTAATTCTTTTGCTTTTTCCTGGGGACTGCCACGAACAGGTTGTTTACCTTCCTCAATCACAATTCCTGTCTGAGCAGCTTTACTTTGAATACTCTGAATTAATCTGCCATAGCTCCATGAATGGATATTGATTCTATACTGTTTGGCGTATTGTTGCTGGATTTCTACGGAGCCAGGACATTTTGTTTCAGCTATGGCTTGAATTTCACTTTGGAGAATATCTCGCATATCCCCTAGCTTGGGTAAAACAATACTGTCTGCTTTGTAAGTTTGCGCGATCGCGACAATTTCTTTAGCCAATAATCTGTCCACATATTGTCCTAACTCAGATTTTCCAAATTGATTAGGAGAAAAACTTTTTTGTG # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACCCACCCAGTACCTGGAGGGTTGTTGCCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 138348-137796 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000020.1 Nostoc sp. FACHB-280 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 138347 37 100.0 36 ..................................... ATCCACCAATTTATTTCCTGCACCATCTGACATCGA 138274 37 100.0 34 ..................................... CATTTGTTTGCTCCCCTCTCTACTCTTTTAATAT 138203 37 100.0 40 ..................................... TTAACTACTAGATAGCAGAGTACGCTGCCTGGCATCGGTG 138126 37 100.0 33 ..................................... ATGCTTGTAAATCTGGTGAAGCTTTACCAGCAA 138056 37 100.0 35 ..................................... TTGACTTCATATTCAAAAGACTGAATTGATTCATT 137984 37 100.0 41 ..................................... CACCCAGACTTTTTTACCATTAAGTGAACCACCCAAAGTCA 137906 37 100.0 37 ..................................... TATCAGTGACGATGTAGCCGGGGCAGACAATTCTAGA 137832 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 100.0 37 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : TCCAGTTTTAAGGCTTTTTGTAGTTTCTCTATTTGCTGAGAAGTTAAATGATTTTTTGCTGGCATTATTCCTTTTTTTTACTTAATTCAGCTTTCTATTATACACAATTTAAATGCTGAACAGCTTACCAAATAAA # Right flank : CTAATAGGCCTAGAACGAATGAAAATCCTTTAAATCAATACAGTTCAGATAAGAAAACAAAACCAACAAATAATGACTTGGCAAAAAACGAAAGAATGATTTTGGAGGGGGTTTGGGGGACGCAACCGTCCCCCCATCGGGGGCTTGGGGGAGAATCCCCCAAATCTTGTTCATTGTCTGATAGGTAGAGCAGAAATTAAGAAATCAACTCTCATCACCTTAACTGAACCGTATCGGGATAAATACTTTAGTGTTGCTAATACTATGTAAAAGCTCACGCAAAGACGCAAAAGATAACTCTTGAATTTATTTATTTGGAGTGTTCAATTATTTGTGCAAGAGGTCTATAGCGTTGTTAATTCCAATCAGGTACATTCATCTAGCCTCTATCCCCTATCTACTTGTAATGCACTCAACCGAGAAACGCTATAACTATTTCACATGAACCGGAAACACACCCAAAGCAATTAATCTAGCGGGTAAATCGCGCAAAATTGGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 22773-24045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000002.1 Nostoc sp. FACHB-280 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 22773 37 100.0 33 ..................................... GCCTTTCAAAAGCTTCTTCCCTAAGCCTCAAAG 22843 37 100.0 37 ..................................... CAGTTAGTTCAGATGCCGTAGTTTTGGCACTACTTAA 22917 37 100.0 38 ..................................... AAAAATGCACCCCGAATACACCCGTAAGCGCGGTTCGG 22992 37 100.0 35 ..................................... ACGCGCTTATGCACCGAACCCGATCACCCCCCGGT 23064 37 100.0 42 ..................................... GAGAGCGAAATCGCCAAACCGAACTGTGGTGAAACATTCCTC 23143 37 100.0 37 ..................................... ACCGCATCCTGAGTACCACCAACTACAAGCCCAGTGC 23217 37 100.0 35 ..................................... ACCTGCCGTCGATTGCATTTTTTCAGAATTTCCAA 23289 37 100.0 37 ..................................... GTGTCTACATTTGGATGTCTTGCAGCGACAGAGTTTA 23363 37 100.0 33 ..................................... AGGACTGGGAACTTGTTGTCACTTATTCGCCCA 23433 37 100.0 36 ..................................... GGGTGCGATCGCCATAGCCGTTGTGGTTTTGCAATT 23506 37 100.0 31 ..................................... AGGTACTGTTAACTCATTATCTGGACTCCAG 23574 37 100.0 42 ..................................... ATTATTCCCTGAATACACGATTGGAAGCTTAACGCCTTTAGA 23653 37 100.0 37 ..................................... TTCTTGAGTGTCAACGTATCTACGTAGCACTAGAAAC 23727 37 100.0 33 ..................................... AAACTTCTTAGGAATCCACGAGTATTTTATCCA 23797 37 100.0 32 ..................................... TTTTATGGGTCATTAAATTGGCAAGGATGGGC 23866 37 100.0 34 ..................................... AGCACCATATCCACCTTTTGATTTGCTATTTCAT 23937 37 100.0 35 ..................................... CCTGGCTCCACACACTGAAATCGGCGGATTTTGGG 24009 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 100.0 36 GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC # Left flank : TTGTATTTGAGACTTGTAGATCCCCCTAAATCCCCCTTAAAAAGGGGGACTTGAGAAAAATTCCCCCCTTTTTAAGGGGGGTTAGGGGGGATCAAGAAGTTCTAATAATCACAACCAACCACTTTTCAAACATCCTCTAAGGGGTGTAAGTGAATAACTCCTACACCCCTATACTTAGCCTCAAATTTTCTCACTCAGAGGCGCAGAGTCGCAGAGAGGATAAGTAGTTTCAAATTTGAACTTCTAATTTAGCTGTGGATAAATTTCTTCTTAATGCGCGGATGGGTAGGTGTACAAAATATCCCTTTTGACAAAATCGCTAGATTCCTTGAAGTGCAAGCTTTTGCCGAAAAAATTCCTAAAAATCATCCGCGCACCTTACCCAGTCTAGGTTTCAGGCATTTTAGTTAACTCAACTGAAATTTCCCCATGTTAAAATCAACCCATCCGCGAAACCGCACCTTGAAAACTAAATACAGACTGCCTTTCCAGTCCCCGCA # Right flank : CATTGGTCATTCGTCCCGAATTAAAGTTAACTATAAATCTTTGCGCCTTTGCGCGAAACAAAAAATATCCCGCTAATCACCAACACCAAAACACCTAATTCTCTCCGCGCCTCCGCGCCTCTGCGTGAAAAAACTCATTAGACCCATCTATGAAAAACTGCGGTAGAAATTGCTGAATTTGGCTAAAGTCGAGTTAGTGGCGAGTAATTATCAAGTCGAGAAATTGGACAGCCACAGCAATTATCACGAGGACGTAGATTAAGAATGTTACTGCATTTAAGTACTTGGCAAGAAGTTGAAGCGTATTTACAGCAATCTCAGGGGATAATTTTCCCCATTGGTTCTACAGAACAACATGGGCCGACGGGGTTAATTGGGACTGATGCGATTTGTGCAGAAGCGATCGCTCGTGGTGTGGGTGATGTCACAGGTGCGATCGTCGGCCCTACAATCAATGTGGGGATGGCATTACACCACACAGCCTTTCCCGGTACAATTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 75405-73149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000002.1 Nostoc sp. FACHB-280 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 75404 37 100.0 33 ..................................... ATCATTAAAAACGGTGTTGTAAAAGCTAAACAA 75334 37 100.0 35 ..................................... TCTTCATCTTCATAAAAACCAGCTAACTCTTCTAG 75262 37 100.0 36 ..................................... AGCAAGAAACGTAATTTATGCCCTATCTTCACAATT 75189 37 100.0 33 ..................................... TGCTGTATTTACACTCCAAGGATTTCCGACTCC 75119 37 100.0 34 ..................................... TTTGAATTTCTTGCTGCCATTGTTGCGCCTTGTA 75048 37 100.0 35 ..................................... AACATCACCCGAAATACTTTCAAGTTAGGTATTTG 74976 37 100.0 42 ..................................... TGAAATATTGGGTTTAAGCTAAGTACGAACTGTTCTATTGCT 74897 37 100.0 34 ..................................... AGACAAGGCAGGAAAATTGTAGAAGATAAGGCTG 74826 37 100.0 35 ..................................... TAATAATTCAACAACTGAACTTGTTAAAGCAGTCA 74754 37 100.0 34 ..................................... ATAACAAATTGGCTCACTTTTATGGTGAGGAATA 74683 37 100.0 33 ..................................... GTGGCTTAGAAGTCCGCGCACATTTTCAATAAC 74613 37 100.0 33 ..................................... ACAATTGAACGTGCCGCAGTCGCTTTTATCGGA 74543 37 100.0 38 ..................................... GGCAATGCAACCGAGAACAAGAGCAACAAAGCCAAAAA 74468 37 100.0 38 ..................................... AAAGGGCTGATTGGTGCTGAAAATTATGAAAGTATCTC 74393 37 100.0 35 ..................................... GGATTGGCTGATAATTCATATTCTGTTGGTATCAG 74321 37 100.0 34 ..................................... CGCTTCACATCGCCATGCTTTATGGTTGGTACAA 74250 37 100.0 44 ..................................... AATTACTTACTGAGGGTAAACTGGCGCTCCCGCTTGAGCAAGCA 74169 37 100.0 40 ..................................... AATTACTTACTAAAGTAATACTTGCGGAAGAACGAAAAGC 74092 37 100.0 42 ..................................... AGCGATCGCATTACAGTCTGGGCATTGCTTGAAATTACCCCA 74013 37 100.0 34 ..................................... TCAATACAAACATCGTGCGAACATTGGAGAGATT 73942 37 100.0 38 ..................................... GCGGACAATTAACGGGTGCAACTCTCCAGACTCTAAAG 73867 37 100.0 38 ..................................... TCTCTATTTTACGCATGATAAACCTAGAATCATACCAA 73792 37 100.0 45 ..................................... GAACACATTCTTTATGCAGTGGTCTTGAGTTTGGCTTACTTGGGT 73710 37 100.0 44 ..................................... TGTTTAGTTTCCTGCACTAGTTCGGGTGGAACTTCGCCTAAGCA 73629 37 100.0 40 ..................................... GGTTCAAAAATAGATAAACCAAAAGAAAGAATACAAAAAA 73552 37 100.0 37 ..................................... GTCATGCTTCATTCTGTGGAAGGTGGCAGAGAACTTG 73478 37 100.0 36 ..................................... TGGCGCGAGGTGATTGAGTCATTTATTGCTGAAATT 73405 37 100.0 36 ..................................... AGCCTCTGCTACTGAGAACTTACCGTTCACCCAGAA 73332 37 100.0 38 ..................................... AATGTCCAAGCGTCTTTACAAATTCTGAGAATATCTCG 73257 37 100.0 35 ..................................... GACTGCAATAACTCTTGCGATCGCGCTTCATCCAA 73185 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ============================================= ================== 31 37 99.9 37 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : GTTGTGGCAAAATTTGGTGGTCACGGGAGAATTTACAGCCTTAGAATTATGGCAAGCTTTAAGTAGTAATCCCGCAAAATGTTTAGGACAGGAATTAAACACATTAACGGCTAATCAAAAAGCTGAGTTAACTTTGTTTGACCCTTCGCAAACGTGGAAAGTGGAAAGGAAAAATTTACATACACTTTCGAGTAATACACCTTGGATGGGGAAAGAATTACAAGGTCGGGTGTTGCAAATTTGGTGTTAAATTAATTTTGGCAGTTTTGGCGATCGCGCGGATGGGTAGGTGTTCAAAAATAGTGGTTTGGAAAAATGGCTGTATTCCTTTCAGCACAAGCTTTTGCCAGCAAAATAAATTAAAATCATCCGCGCACCTTGCTGTGTATAGATTCCAGCATTTTTGTGTAAATCAATTTGCATTATGCTGTGTTAGAATTTTTCCATCCGCGAAACTGAACCTTGAAAACTTTATAGGACAACGCTTTCTGGCTCCAGCC # Right flank : TTTTTAAAATTCAAGACCTTGATTTTACTTCAGTCCGCGAAGGCGGACTTCGTTTTTATAGCCGCGAATTCCATTCGTTGGGGCTAGGTGCAAGATATGTGTCTACCTTGTCCCCCTTGTCTCCTTTCTCTCCCTTATCTCCTTCATTCACATACCAAACATAACTGCTGAGACTTAATAACTTAAACCACAATTAATCTTACGCTTTTATAGACGAAACTACTTGAATTGTGTCTAAAAAATCAGCTAAAAAATCTTGATTTTTTTTAATGTGTATACAGAATATAAGAGAGACATTTTAGATGTTGTGCAGCGTTAATTAATATCACCAGATTTGTGGAGGTAAATAAATGGCAAGGATAACTATCTCAGACCTTTATCCCAGTAGTGACGAACAATATATTACTGAACTAACTGCTGGAGAAGCCACAAAGGTGGAAGCAGGCGCAAGCTCAAGTTTCATTACAATTGACACAAACGACCTCATAAAAACGCAGCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 15779-16627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000021.1 Nostoc sp. FACHB-280 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 15779 37 100.0 35 ..................................... CTAAAATATATTGAGCATAGTAAATTTTTAAAGGG 15851 37 100.0 34 ..................................... GGAATGGGATGAATGGGAAGCAGCAAACTCAGAC 15922 37 100.0 37 ..................................... AATCAAGCAATGGTTCATTACTGGGGCAACCAGCGTA 15996 37 100.0 34 ..................................... AGGGATTGGGTAATCTGCGCCGAGGTTTAACTTT 16067 37 100.0 36 ..................................... ACGTCGAATTGCGCCGTTACCGTGGCGGTAAAAATT 16140 37 100.0 37 ..................................... CACAGGTGCTTGGGGTAGTGTTGCGCTACAGACTTAC 16214 37 100.0 41 ..................................... ACTCTTGCCCCCGGTTGGTATTATCAAGACAATGTTCTTTA 16292 37 100.0 36 ..................................... TACGTATTCAATAAACCTTAAATCTTTTAATCTAGG 16365 37 100.0 36 ..................................... CTGTGGGATAGATGCACCGGAGATTAAACATGGCAA 16438 37 100.0 41 ..................................... CATGAGTCCTGCCCAAAATTTTGGGAACAAAGTTGAAATTT 16516 37 100.0 38 ..................................... AGCTCTTCTGTTAAAGCTAGTGGTGGATTCTGCTGCAC 16591 37 94.6 0 ................................T...A | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 99.5 37 GTTGAAATTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : AAAGAAAGTGGTTGTATCTTACGATGTTCCAGAAGATAAACGCCGTACCAAAATCCATAAAATTTTAAAGTCTTATGGACAGTGGGTGCAGTACAGTGTGTTTGAGTGCCAGTTGACTGAGACTCAATATGCCAAATTGCGATCGCGTTTGCACAAACTCATTAAACCAGATACCGACAGCATCCGCTTTTACTTTCTCTGCGCCTGCTGTTTTGATAAAATCGAACGCATCGGTGGCGAACAACCCCGCGACGAAAGCATTTTCTTTGCCTAATGCGCGGATGGGTAGGTGTAAAAAATTAGCCTTGAGGAAAAATGGCTGTCTCCCTTTCAGCACAAGCTTTTGCCGAAAAATTCAATTAAAATCACCCGCGCACCTTATACAGCAACGGTTTCAGCCATTTTCCTCAAATCAACTGACTTTTGATACTGTTATAATCAACCCATCCGCGAAACAGAACCTTGAAAACCACATATATATTAGCTTTCCGGCTTCCGCA # Right flank : ACATTGCATTGTTGATGTACAGATAATAAAGTACATTCCCAAACTAAACGCGGTTGGGCATAAACTAAAAGTGCCTTACGTGCTTGTTCTAGCTGATTAATAATTCCTGGTTGATGCCATTTTTGCCAATAAGAATGTTGCAGGTAATCAATTAACCATAGTTGTGATTCTGTATCTAAATCTTTATCAATTGTTTTAGCTAATTCTAAAGCGTGGCGGGCAGATTTTGGGGCTGCGGTGAGGTGTGTGAGTAACTCAGAGGGGATAACTTGTAATTGTTCATAACAGGCGATCGCATTTCCCGGACTGCCCGCCGCTATACTCAACACAGCCGGATGCTGCAAAATTTCTGGATGATTGGTTTGCTGCAATACTTGAGTTAAAGCTGCACTATCCAAGCAATAAAAAGGAATCTTTTGACAGCGCGAAACCAGAGTTGGCAAAACCGACTCCGGCGCAGGTGCAATTAAAATAATCGTTGCTTGTCCTGGTTCTTCTAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 90624-89480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000021.1 Nostoc sp. FACHB-280 contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 90623 37 100.0 33 ..................................... GTGATCAATCGCTAACTGCTTGGCCACAGTTTC 90553 37 100.0 34 ..................................... TTTCACGTATGAAAAGCTCCCCCCTCACCCTTGT 90482 37 100.0 37 ..................................... AGTACATCGCGGCGGCTAGTCTGAGGATTGGCAGTAC 90408 37 100.0 34 ..................................... ATATTCGAGCATATAAGTTCGTTGCAGATGTTCC 90337 37 100.0 35 ..................................... CTTGCGACTTAACAGCAAGTATTGTGACTCCAGCT 90265 37 100.0 36 ..................................... GGCACAGTTAATTCTGCCTGCAATTCCCAACAGAGG 90192 37 100.0 37 ..................................... ATGAGAAATTGAGGAGATTTGACTGCCATCGTATTCA 90118 37 100.0 34 ..................................... ATCTGTCTCTACCCTTATGATTAGCGGCGATATA 90047 37 100.0 46 ..................................... ACAGCTTTGAGATGTGGTATCAGTCAGTTCGCCGCCTATGGCGATT 89964 37 100.0 38 ..................................... GTAGGTGATGGTCGGTACAACATTGCCGATAGAATAGC 89889 37 100.0 40 ..................................... AACTACGTCTGCGGCAGTGTTTTGCTGATTTTTATTCTTG 89812 37 100.0 37 ..................................... GCTTGATATCGCCTTGTATATCCGCAACAACGATATT 89738 37 100.0 37 ..................................... GCGAATGCCGTCTATTAACGCTTCTATCAATCCTTCT 89664 37 100.0 32 ..................................... CCTATGGCGGTATTTGCTCGATTCGCCGCCTC 89595 37 100.0 37 ..................................... TTTTAGTTGCTTATTTACATCTCCTATAACAATAGGA 89521 37 81.1 0 A.........T...........G...ATC.......A | T,T,ATC [89483,89485,89493] ========== ====== ====== ====== ===================================== ============================================== ================== 16 37 98.8 37 GTTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : GTAAATCCCGTCTAGAATTAACATTCCAGGCTCATAGCTATGGAAGACATAGAAGAATTAACCGCAGATGGACGCGGATAAACGCTGATAAAATAGGTGTCTCTGAGGCAACATTTAAAGCTAGTAAAAATAAAAGTAGGTTGGGTGGAACGAAGTGAAACCCAACATGGATAAGTAACACAGCAATTCTACATAATTTACAAACATCGCTCTACCTTGTCTACCCTGTCCTCCTTGTCTACCTTGTCTCTGTTATGTTCCTAGCACCTAAAAATGCGCGGATGGGTGGGTGTAGAAAATCAAGCTTGAGGCAAAATCCCTGTATGCCTTTCCACATAAGCTTTTTAAGGAAAATTAAATTAAAATTATCCGCGCACCTTACGCTGTCTAGATTTCAGCGATTCACCGTAAATCAACTGACATTTACTAGTGTTATAATCGACCCATCCGCGAAACTGAACATTGAAAACCAAATACAGACTGATTTTCCAGCCCCCGCA # Right flank : TTTCTATATCTTTATTCTTCTTTCTTACCTTTGCGTCCTTGGCGTTCTTGGCGGTTCGTTTCCATATTTATGTTTTTCACGACTCATTTAGGATTGCTATAGGCGTTTAATGAGTGTACCTTTTTGGCAATTTAATTGTAACTTTAGTTCCCTTTTCTTCTTGACTAGATAAACTAATATTACCGCCATGTAACTCTACGCAAGCTTTAGTAATTACTAAACCCAAACCTGTTCCTGGGATAGTGTCAACATTACTACCTCGACTAAAAGATTTGAACAAATTTTCTTGATCTACAAGAGGAATACCTATACCCTCGTCTTGAATTTCTATAAAGATTTCTGATTCTTTACCATTTAGATAAACTGTTACATTGCCACCTGCGGGTGAATACTTGATTGCATTAGATAATAAGTTTAAAAGTATTTGGCGCAAAAGTCCGCGATCGCCCCAAAAGTGCTGATAATTACCTGTCACTTGCAAAATTAATGTGTGGCGATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 71805-72777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000033.1 Nostoc sp. FACHB-280 contig33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 71805 37 100.0 33 ..................................... CGAAGAACAATTAGAATCTGTTGTAATCGAAAC 71875 37 100.0 41 ..................................... AAGTTCAAAGTACGCAAACCCTTCTACATTAGTACCAGCAG 71953 37 100.0 32 ..................................... GAACGGGCGGACGAAGTGACAGCAGCACGGCA 72022 37 100.0 34 ..................................... TATCAATCATCGAGACTATCAACCAAAAACACTA 72093 37 100.0 37 ..................................... CTGTACCAAGGTGAGGATTGCCATTTTTAGCAACTTT 72167 37 100.0 36 ..................................... AGGATATAACTCAACACCCTGACGAATACCAAATAA 72240 37 100.0 36 ..................................... TTTAGTCTTTTCTGCTAGTATCCCTGGATGTAAATT 72313 37 100.0 36 ..................................... TTAAATTCTTTTTCTGAGTGACTTTGAACAATCCCC 72386 37 97.3 36 ...........................T......... CTCGATACCTGGTGCTGGTGTCATTACCTCTGCAAC 72459 37 100.0 36 ..................................... TTACTGGATTATTTGACTTTTTCGTAAGCGCATTTG 72532 37 100.0 31 ..................................... GCAAGACGAATACGAAGTGCAACGGGTGAGG 72600 37 100.0 34 ..................................... AGCTAATAAATCAGTAATTGTCTCTATGTGTGCG 72671 37 100.0 33 ..................................... CATCAGCCATTGCATACTACCAAGCTAATAAAT 72741 37 89.2 0 .............C....T.T........C....... | ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 99.0 35 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GGAATTGGGCGGAGAAATTCTCAAGCTTTGTGTGAAAGTCGGTGGTAGTCTTTCTGGTGAACATGGCATTGGTTCCGATAAAAAATGTTATATGCCAGAAATGTTTAACAGTGTTGATTTAGAAACAATGCAATGGGTAAGGCAAGTATTTAATCCCCAAGGTTTAGCCAACCCCGACAAAATTTTCCCCACACCCCGCACCTGTGGCGAAGCTGCAAATGCTATGAATCACAAGCAGTTTGAAGGCGTGGAACGATATTAAGCACCCTAGAAATGCGCGGATGGGTAGGTGTAGAAAATCAGGCTTGAGGAAAAATCGCTGTATTCTTTGTGGTGTATGCTTTTGCATAAAACATAATTTAAAATTACCCGCGCACCTTATACAGTATATGTTTCAGCTACTTGACGTAAATCAACTGACATTTACTAGTGTTATAATCAACCCATCCGCGAAACTGAACCTCGAAAACCAAATACAGATTAGCTTTCCGGCTCCCGCA # Right flank : CCTATTTTAAATTTTATGAAGCCTTTCAATAGACCTCTTGCATAAATCAGATTATGCCTACTAAACAAGCGAATTTTCTGTAAGTCTTTGCGCCTTTGCGCCTTTGCGTGAGACCTAAAATTCGTGTTTTATAACATTCGTGCAAGAGGTCTAATGACAAAGTTGAAATTTCACTTAATAAAATGGGTATTTTTGATTTAACAGTCAGCAGTCTTCAAATAAACTGATAACTGTTGACTGTTAAATGATTTATGCTGTCTCCAGCATTGCAGGCGAAAAGTGAGGTTTCAATACTTCTAACCACTGTGCAATGCGTTCATCAGTTTTATCGCTTTCATTTACTTCATCAATTGGTAATCCCACAAATTTATCATTGCGGACAGCAAAGGAATATTTGTAAGTATAGCCATCTAAGGGAAACTCACCTACTAAAGTAGCGCCTAACTTTTTGAAGTGATCGTACAAAGTACCCAAGGCGCTAACAAATTGTTCCCCGTGAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 19941-20275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000049.1 Nostoc sp. FACHB-280 contig49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 19941 36 100.0 39 .................................... CTCTACCTCTTAAAGTGCTTGCCTTCCCCTAATTCCAAG 20016 36 100.0 38 .................................... CGTTAGATATTGCATAAATTCCTCCGATTGAAAAACAG 20090 36 91.7 41 ..........TG.T...................... CGTAATAGTAAACATTTACCAGTAGAAGCATATTCTAATAG 20167 36 88.9 38 ..........TG.T.............A........ ACTGACATACATGAGCGAAAGGGAAACAAAACGCAGGG 20241 35 72.2 0 G.......T.TCTT...T..C...A...-....... | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 90.6 39 TTTCCAAACCCAACTACCCCGCAAGGGGACTGAAAC # Left flank : CGAGTTGACGGTTGGGGTGCAGCATTTGAAGTCGTTCGATTATTTGCCTGATGAATGTCAGCAGATGCAGATGATATGCGATCGCATCACGCGGTTGCGGGAGAGTGAAAACTTGGAAGAAGCTGCAAAAGCTGTGTTGAAGTATTTGGGGGAAGTGAAGCGACCGTATTTGACTGATGTAGAGAAGAAGCTGTTGAGTGTGATTGAGCAAGAGTACTGGGTTGCGGATTGATCTAAAGTGTAAAAAAACTCGACAATAGATGGATACTCATCTTATGATTGGGTAATCAGCTTGATAATTGTCGAGTCAAAGCGAGGTCAAAAACCCTGGAGACTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTACAGCGTTTCACCAATCAGGAAAGTTGAGAATGAGTTGCAATAATAGCGGCTGAAATCGACTCTTTTTTGAGGTTCGTCAAATCGCTTAAGAGGAAGCTTGCTCTGTAACAGTTTCAGCTCCGAGCAG # Right flank : CTATTAACTCTTGCGATCGCCATTAAGTTTTCGCTGATAACTGACAAAAAAGCAGAAACTACTCGTTAGTATTTCTAGTAGGAGAATGAAGTCGTGGTGTTCAAACCATAGAGGTGAAGCAGTCATGTTCATCTTCAAGATTTTGACCGCACTTATCTGGAATATAGTCATCTTCGGTGGTTTACTATTCTTGCCAGCCGGGACATTGAACTGGTGGCGTGCCTGGGTGTTTCTTGGTGTTGTCGTTGTTGGGACTGTAGCGACGATGATTGGTGTGTTTCGAGAGGATGACGAGTTATACAAGGAACGACTCAAACCACCGATTCAAGAGTCACAACCCCTGACTGACAAAATTCTCGCCAGCTTATTAATCGCGTCATTCTTGGGGATAATTACGTTCATTCCCTTAGATGTGTTCCGATTTCACTTGCTGTCCCAACCAAGTGCGATCGCTTCGGCACTGGGATTAGTCGTTTATGTCACTGGTTGGTGGATTATTT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCAAACCCAACTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29692-30314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000057.1 Nostoc sp. FACHB-280 contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 29692 37 100.0 36 ..................................... AGTCTGTTGTTAATGGTGTTTTAGCTGCTTCTTTAT 29765 37 100.0 34 ..................................... TCATGTCTGCGGTCTTCATGATGGATGTTTGCGT 29836 37 100.0 40 ..................................... TCATAGATAGCCTAAGTAATTCCTCTACTCTTCATAATCC 29913 37 100.0 35 ..................................... TAGCGAAGCTGATCCAGTCTTCATGCTGGAAATTT 29985 37 100.0 35 ..................................... AATGCAAATACAAGCTGAAATACAAGCGCGGCAAC 30057 37 100.0 42 ..................................... GGAGATACCCGATGCAATCATCGCTCGATTCCCGGCAAGAAT 30136 37 100.0 35 ..................................... TTCAGTCCGTCGCCACTGCCAACTGCAATCACCCC 30208 37 100.0 33 ..................................... GTACCTTTCAAATTGGCGTTCAAGGGACTAACT 30278 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 100.0 36 GTTTCAATCCCTGATAGGGATTAATTGAAATTGCAAT # Left flank : TCCGTTGTCAGCAGGATGTTAGATTTTAGCTATAAATTGCTAGAAGAATCGGTAAAAATAGCAGTTGAAAATGTCGGACTAAACCCCACAATCGGATTTTGGCACACGAATCAGTATCAACAACAAGCCTTGATTGCAGATTTAGCGAATGAGTTTAAGCTCTACAGCGATCGCGTGGTAGTCAAAGTATTAAATAAACAAGCGATTGTGAAGGAAGATTTTGATAAACATGGAGATAAACCAGGATTACCACTTTCTGTAGTTCATCTACTCCTCTACTCATATATGCAAAAAATGAACGAGCGAGTTACCTATCCAGGGGCAAAAATCAAATGCTCTTATGAACAACTTTTGTGCTTGCAAGCTAAACAAATTGCTATGGTGTTATGTGGTGAAATTAGTGATTACTATTCGCCTGATTTGCGTTAAATAGTCCATAAATAAACTAGAGAATTAATATTCATGAGTGCCAGTCAATATTTAAAATCTGAAAAGTGAAA # Right flank : TGGCTGGAGCCTGAAAGCTAAACTGTATTCGGTTTTCAAGGTTCAATACCGCCAATAGTTCAATTGTAACCTGTATAAATTTCAATTGATTGACACTAAATCGCCCAAACGCAGAATAGATAAGGGGCGCGGAGGATTTTAACTGGTTTTCGCCCGAAAGGCATGTGGTGAGAGGGACACAGCGATTTTTCTGCAAGACCGATTTTGTACACCTACCCATTCGCGTATTTAGCTGAAAATTTTGTTGTGTTTTGGTAATTTTCACTCTTGATTATAACCCGCACAAGACAACGGATGCTTCTTTAAACTGGTATTGGTGTGATTGCTTGAACGCTCTTGAAGATAGATTTTTAGGCATTTGAAGTCCGAATAAAATTATGTTGCAGCAACACTTCAACAGTAACTTGCTCGAATATGATAATTTTCTAACTGCACACAAGTATTAAAAACGTGGACACTCGTAAAGAAAAAATCTTGGTGGTAGACGACGAAGCAAGTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTGATAGGGATTAATTGAAATTGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 36067-37139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000059.1 Nostoc sp. FACHB-280 contig59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 36067 37 100.0 35 ..................................... ACGATGGGCAGAGTCGTCGCTACCGTGACACTAAA 36139 37 100.0 41 ..................................... GGTGAGTGCGCCTTTTCAAAATAACCTATTTTCATCTATTT 36217 37 100.0 41 ..................................... ATCGAAGAACGCAAGGAAGACACACTAACAGCACTACAAGA 36295 37 100.0 33 ..................................... GGCACGGGGGCAATGCTAGAAGATGAATTTATC 36365 37 100.0 36 ..................................... ACTTTGGGTAAAAAAATGGCGGCTGACTTGGGAGTA 36438 37 100.0 42 ..................................... TATGAACTAGTAGTTGATTCCAGTAAAACTTACGGCAAAGTT 36517 37 100.0 40 ..................................... CCCAGTAACCTTCGATGCCTGTATCTAGGAATAAAGGATA 36594 37 100.0 39 ..................................... TTATCCCATAATCCAGCAAGTAAGGTGAATAACAGCCAG 36670 37 100.0 37 ..................................... TCCGAAAGTAAATGGTTTGAGTACAGAGCAGATTCAG 36744 37 100.0 37 ..................................... CACAAAAAACCCGGATGCTGAATATATTTCTGAGCAA 36818 37 100.0 35 ..................................... TCAAGATCCGCGTTGCCCCAGTCAATCGTAGTATC 36890 37 100.0 33 ..................................... GGCAGCAACCCATACCCTACAGCTTTTAGGATT 36960 37 100.0 36 ..................................... TATTCCTAATCCTAATTTTGTGCCACCTACAGAAGT 37033 37 100.0 33 ..................................... GCACAGGTGCAGCTTCCTGTCTTCTGGTGATTT 37103 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 100.0 37 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : TGATATGCTGACGCGGATTCAAAACTCCACATTACCAGGAAGACCGCGTTTAGGTTTGCGCCAAGTAAAAATTACCGTCGGTGAACCAATATCTGTTACCGAACGCTGGGAAAAGTCCCAAAACAACCGTCACGCAGCCAGACAAGCAGCCAGTAATTTAACCAAAGACTTGCAAACAGCATTAGAAAATTTGATTAACTAGTACAACAAGGCAAAATTCAAAAGGCAAAAGTAAAAAGTCAAAAGGCAAAAGTAAAAGCTAAATTTTACCAAATGCGCGAATGGATAGGTGTAAAAAATTAGGGTTTCACCAAAATGGCTGTATTCCTTGCAGCATCAGGTTTTGCCGAAAAAATAAATTAAAATCATCCGCGCACCTTACACAGTATAGGTTTTGGAGATTTAGCGTCAATCACTTGACATTATCGGGTGTTATAATCAGTCAATCTGCGAAACCGAACCTTGAAAACTTCATAGCAAAAGACTTTCCGGCTCCCGCT # Right flank : CAGAGTTTTCATCATCGAACACAGAAGTAAGCTCTTGTGCATTTAAATTGTGATAATAGTATCGCCTTTATTTTTGAGTTTTCGTCCCCATTTAATAATTAACGCTCCTTCATTTAAGAGTTGATGTAATAAATATTCTAGGTCTTCAATTGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 197536-194974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000006.1 Nostoc sp. FACHB-280 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 197535 37 100.0 39 ..................................... CTGTGGGTACACAAACCCATCAGGAAGGATTTTTCCTAA 197459 37 100.0 36 ..................................... ACTGGCGCGGGAGAGATGGCGAATTATGCCGTGCAG 197386 37 100.0 39 ..................................... TAGTCGGAATTGAGGAGTTGGCAGAATTAATCAAAGAAA 197310 37 100.0 33 ..................................... AACCTTGGGCATATAAAAACCGAACTTTGTATA 197240 37 100.0 37 ..................................... GGTTCGGCGTAGGTTACATCAGCCATATTTAAATCAA 197166 37 100.0 42 ..................................... TACCAGACTCCGGCGGGTAGTGTGAGTTGAGATTCCCTTAGT 197087 37 100.0 35 ..................................... AGATGTGATTATGAACTAACAAATTTCAGTAATGG 197015 37 100.0 40 ..................................... TTTGAACCCTATGCAATCAGTTTTAACGAACAAGAAGAAG 196938 37 100.0 36 ..................................... CCAAGGGGGACAAGATGCCCTTTAATCAGCAAGTGT 196865 37 100.0 35 ..................................... TCGACAATCCCCCAGCTTCCCGGCACGGGACAAAC 196793 37 100.0 38 ..................................... GAGTACTGGAACGTACTATGTGCGCGTGGCAGCAATTG 196718 37 100.0 34 ..................................... TTTGGACAGGCAGAATCAAGTTTTTAGACACAAA 196647 37 100.0 36 ..................................... TTGTGCCAATAGGGGGAAAGTAGAATACCTGCTCTA 196574 37 100.0 34 ..................................... GGAGGGTCTCCAGAGATTATCGATGGGTTGATAG 196503 37 100.0 35 ..................................... ACTTTTAACTAGCATCCACCTTTTAGTATTTGAAT 196431 37 100.0 35 ..................................... CAAGTCTTTACTGAGAAACCCATCGCCCACATTAT 196359 37 100.0 42 ..................................... CGGTATTCCTGTTAATTATTGCGAGAGTGGCGATAATGTAGC 196280 37 100.0 33 ..................................... GCGCCACCAATAGCCATGCAAGGTGCGATATTC 196210 37 100.0 35 ..................................... AGCAATGCCAATCGGTAAATGATTTACAAGTACAT 196138 37 100.0 34 ..................................... TAGTAATGAAGATGTGGCGGTGAGTAGTGGGGGG 196067 37 100.0 35 ..................................... GTGCGCTACGGTCGATATTCGCCAAAAACAAATCA 195995 37 100.0 35 ..................................... GATTGAGGCTTGTAAAGACTGGATACCTGAGTTTA 195923 37 100.0 42 ..................................... CCACCTCTCAAGTGGAGGCGTGAGCAGAATGAGCGATGAAGA 195844 37 100.0 45 ..................................... GAGTAACTTGGTAGCGTGGTAGAGATACTTTATCTATAAGCAAAA 195762 37 100.0 36 ..................................... AAAAAGTGGGTCGCCCCGCAACTGGGCAAGGGAAAA 195689 37 100.0 41 ..................................... ATTTAATGCACGGGGACGGCAGCAGTTGAGCGATAGGCAGT 195611 37 100.0 47 ..................................... CAAAATACGAGCAAATCGGAAGTCATAGAAGCACTGGTCAGGGAGAA 195527 37 100.0 34 ..................................... CTAGTACCTTTTGGAATTTCTTACGCTTTGAAAT 195456 37 100.0 38 ..................................... ACTTGCCCTGCTTCGGTTGCAACGACCTCTTGCAAGGA 195381 37 100.0 34 ..................................... ACGCATGTATATGGTAGTTCGCCCGGCTCGAAGC 195310 37 100.0 38 ..................................... GAGCGAAAAGTTAGAGAAGAACACGCACACGCCATTGA 195235 37 97.3 36 ...........C......................... TATTCCCAAAGTATGAACTAGATGATGAGTATTCAC 195162 37 97.3 42 ...........C......................... AGCCAACATTTTTGTACAGGCTGAATAAAGTATGGCTTGATC 195083 37 97.3 34 ...........C......................... GGACTGGTGTACAGTGTTGAGCCAGATGACCCAG 195012 37 97.3 0 ....................................A | C,A [194977,194979] ========== ====== ====== ====== ===================================== =============================================== ================== 35 37 99.7 37 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : AATTTTATCAAGAACTGAAAAAAGGAAACATCAGCAAAGCTAAAGCTCTCCGTCATGCTCAACTCAAAATCTTGCAACATCCTAATTACAAAGCGCCTAGTTTTTGGTCTGCTTATGTGTTGATTGGTAATTGGTTGTAAGCTAGGGTCTAGGAACTATAGGCTATCTAGTCTTGCTTAGGTTAGGGAGCCACTGCGTTGCGGAGATTTCCCGCATTGTAGCAAGTAGCGCAGAAGGCACACAAAAGATATTAACAGCAAAAATTTAGTCAAAATGCGCGGATGGGTAGGTGTGCAAAATCGCCCTTGAGTAAGAATGGCTGGATGGCTTAGAGGGTAAGGTTTTGCAGATAAAATTAATTAAAATTATCCGCGCAGCTTACACAGTCTGGGTTTCAGCGATTTAGTGTAAATCAATTGACATTCCACCATGTTAAAATTATCCCATCCGCGAAACTGCACCTTGAAAACTAAATACAGTAAGCTTTTCCAGCTCCCGCA # Right flank : GATAACTCAACAAAAAACGAACAAATAATTTTGGAGGGGGTTTGGGGGACGCAACCGTCACCCAATCGGGGGCTTGGGGGAGAATCCCCCAAATCTTGCTCATTGTCTGATAGGTAGAGCAGAAAATTGAGAAATCAACTCTCATCACTTTAACTGAACCGTATTGATTTATAAACACCTCTCTCCCTTGCCTTTGCTCCTCACATATCAACACAAAGACTGCTATAAAAAAAGAGGTCTTTCTTGACCTCCTGGGAACTCCCTACAATAAAGTTCTATTTGTATAGATGAATTAGGACAGGCCAGTGTTGGTGCCTTGCTTGCCAGTTGCCAGTTCCACTTTAACGATTTTGCCACCCATTTTTTGAATCCGTTGCTGTTCACGGAACCAGTTTTCGTAGGGAACCAATTTGGTGAAATAGGTATTTTGTAGTTCGCGTTGAGTACGAATCCGGGTTTGGCTGGGAACGCAAGCAGTAATTTTAAACAACCGCGCCATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 14549-13483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000080.1 Nostoc sp. FACHB-280 contig80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 14548 37 100.0 36 ..................................... GTGAATTGTGTCCACTGCGTAGGTTCTTCAGGGTCG 14475 37 100.0 36 ..................................... ATTTAAAATTTAAACCAGATGACATAGTGCCTATTG 14402 37 100.0 37 ..................................... ATATAATAGAATAGACACAGAAAATACAGAAATGAAA 14328 37 100.0 36 ..................................... AAATTTCAATTTCTACGTCTGATATTTTTTTCAAAA 14255 37 100.0 37 ..................................... CTCTAAAATCATAGCTTTATTCTCCAAATTAAAAAGA 14181 37 100.0 37 ..................................... AATTTGTGATGCTGGGGCGCGATCGCTCTCTTGTCAA 14107 37 100.0 34 ..................................... TCAGCAAATCGTCAGGATTTACTGAAAAAGTTTA 14036 37 100.0 35 ..................................... TGATGTGTGAAGTATGGCAAGTCTGATCGGGTCAT 13964 37 100.0 43 ..................................... TCTCTATATATGATGAGAAAATTGATGCTCCCCGCCTTACCTG 13884 37 100.0 36 ..................................... TTACGCTGGTCTGATACAAAGATAGTACAGTATGAC 13811 37 100.0 36 ..................................... ATTTTACGATAATGGTCATCGAAAGAACAATCAAGT 13738 37 100.0 35 ..................................... TCAACGACTGGATTCTAGCGATCGCCAGAGAAACA 13666 37 100.0 36 ..................................... ATGAATGAGTGTCTGTTACTGTATGGCTTGCGGTAG 13593 37 100.0 35 ..................................... ACTTCATCACGTCATACTTGAGCCAATTCGTAAGA 13521 37 94.6 0 ................................T...A | AA [13488] ========== ====== ====== ====== ===================================== =========================================== ================== 15 37 99.6 36 GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Left flank : TAGCGAAATGACTGTTGGGGTGCAGCATCTCAAATCTTATGATTACTTACCCCAGGAATGTCAGCAGATGCAGGAGATATGCGATCGCATCACACGGTTGCAGGAGAGCGAGAATTTGGAAGAAGCTGGTAGGGCTATGTTGAAGTATTTGGGGGAACTGAAGCGATCATATTTGACTGATGTGGAAGAAAAGCTGCTAAGTGTGATTGAGCAAGAATATGGGGTTACGGATTGATCTAAAGTGTAAAAAACTCGACAATAGAAAATACTCATCTTATGATTAGGTAATCAGCTTGATGTTTGGCAAGTCGAAGCGGGGTCAAAAACCCTGGAGACTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTACAGCGTTTCACCAATCAGGGAAGTTGAGAATGAGTTGCAATAATAGCGGCTGAAATCGACTCTTTTTTGAGGTTCGTCAAATCGCTTCCCAGGAAGCTTGCTCTGTAACAGTTTCAGCTTCGAGCA # Right flank : ATTCCAACGCGATCGCGCTCTGCCATAAGTCCCCGAATGGGGATTAAAAAAGAAGCAAACTCTTAGCTTGCATCGCAAAGCTCTTGAATCACTTGTGAAAACTCCTGGGTCAAAAAGTCGGAACCACCTGCACTATAAACTTGCTGCAACTGTTGGTAAAACCATAATGTTCCTTCCCTGCCAGTCTTAAACTGTTGCCAAATGCTAGTGCCATGTTGTCGTAAGTCTGCCAATAATGACCTCGCATTGTGCAGCTTATCTGCCAAAGATACCCGCCGGATTGAGGGTGAAGCACACCGCAGATTTTCTAAATACTTTTGCTTGCGTTCTTGCCAAGGTGGTTTAGGGTATGTGTCAGATTCGGTGCAGCCATCAACTATTGCAACGACTGCATCACCGAAACGCTGGCGGATTTCTTCACGAGTGGATTTGCCTCCTTGGTCTTGTTGAACTAAGCCAGAGAATCGCTTCTTCTTCAGTTCCGCCAGCTTCCAGTACGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 118339-118663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000008.1 Nostoc sp. FACHB-280 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 118339 35 100.0 39 ................................... TCAGCAGGTAGGCGGCGTGCTGGGCAGTGGGGTTTTCCA 118413 35 100.0 39 ................................... CTTAAGGTATTTTTCGTGCCTATTGAGGTATAAAAAACA 118487 35 100.0 38 ................................... GCTTAAATTTTCTTCATATTCTGTTTTCAGAAACAAAT 118560 35 100.0 34 ................................... TTGAACGCATCAATCTGATCTTGTTCTTTTATGT 118629 35 88.6 0 ....................G........AC...G | ========== ====== ====== ====== =================================== ======================================= ================== 5 35 97.7 38 GTTTTAAATCCTTTACCCCTCACGGGGATGGAAAC # Left flank : GAAATTGATATGACCTGGTGGGCAATTAAATTATTGAAAAACCTGCGTTTGGCACAAGATGTCAACTTGCCACCGAAATAGATTCACATCTTGCGAAAATTTGGATTTGCCAGACTTCTAGCTTTTGTGATGGGAGAGGTAAAAATCTATCGACCTATGATTTGAAAACCTTGATTAAGAAATTGCATTGTGTTGATTGGTATGGTATGTTTTATACCAACGCCAGCACCATGAAAATTAAATCAAAGTTATTTGCTTGTAACTGAAATAGTTAGTTTCCGATAACAAGTTTGTAAAGAAATGTAAACTGAGGGGGTCATCCACAAGCTGAAAAGCTGATTGTTTCGTAGACCCCATCAGGTTGCTTACTGTGTAAGGGTTTAGATGGCTTTGAGGTGGTACCGATTATCAATAACTGTGGCTTGTTGACAGTAAAAATATACCCCCCTCAGTTTTATAGCTCTGTAAGCCATATTGGGTAAGCTCTCTGTCAGAGTAGG # Right flank : GATTGAGATTAGTTAGCAGTACGATCGCATTATGGTAATTAGAGGAAGTGCGATCGCTGTGATGTTAGGGTGTATTGTCTGAGTCAGAATCATGAATGTGCGATCGTGGTATGACCGCTATGGAGACTGTATTTGATAGAATAGATACGCAATGGTGCGATAAATACAAACAAATTTTTCTGCTAGATGTCAGCTAGAGATTTATTTCATGAAGCGGTTAAAAAAGCACTCCATAAAGAAAATTGGATAGTTACTGATGATCCCCTACAAATAGAATTTGAGGAGGTGACGCTCAAAATAGACTTGGGTGCAGAAAGGCTGATAGCAGCAGAAAGAGAAGGCGAAAAAATAGCCGTGGAAATTAAAAGTTTTGCGAGTAACTCTGCGGTTAGCGACTTTCATACAGCATTGGGACAGTTCTTGAACTATCAAATTGCACTGGAAGAAAATGAACCAGAACGTCAGTTATATTTGGCAGTTCCAATTGATGCTTATGAAAC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATCCTTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 177497-175834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSD010000008.1 Nostoc sp. FACHB-280 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 177496 37 100.0 37 ..................................... TAGTGCTTCCTTACCGCGCAAGCGATCGCTGATCTGT 177422 37 100.0 34 ..................................... GTGTCACCCTTGTGATTTAAGGGCGAATAGTCCT 177351 37 100.0 43 ..................................... TTCAATTACGGAAGATACAAAATTTCTTCCGGCAGGTGCGAGA 177271 37 100.0 40 ..................................... AATTTCTTTAAGTGGTTGTCCTTTGCGTTGACCGATTTTC 177194 37 100.0 35 ..................................... ATCTTCAATTAGTTGAGGAAAATTACCACCACCAA 177122 37 100.0 35 ..................................... GAGTATTCAGAAAATGACTCGCAATCGAACGAAGA 177050 37 100.0 34 ..................................... GCGGACTTGAACAAACCGACGCTGATCAGCGTGG 176979 37 100.0 35 ..................................... GATTATGCTGGGCGAAAGGAATGCCAGTGCATTCT 176907 37 100.0 42 ..................................... GCGTTCTGAGGGATTTGCTCAAAATCTAAAGAGATCCCATAC 176828 37 100.0 40 ..................................... GCAGATGAGAGAGTGGGGGATACGTGGTGGCAACATCCAA 176751 37 100.0 34 ..................................... GGGTAGTCTTGAAAAAGATGAATTACTGAATGAA 176680 37 100.0 35 ..................................... ACGTGTTAGAAATCCTGTGCCACCGATGGTATACG 176608 37 100.0 35 ..................................... AAGTTTGTGGAATCAATATCCACCCCTATTTTATT 176536 37 100.0 35 ..................................... AGAAACATGGATCTATATTAACAATAGTGCAGGTG 176464 37 100.0 36 ..................................... GCTAGATGCCAGTACAAACTTGAAAATCTTCTATAC 176391 37 100.0 41 ..................................... TAAAATGTTACAAAAAGACAGTGATTATAAATACATAAATG 176313 37 100.0 33 ..................................... ATGATGCCCAATTACGAGCCAGTAATCACAGCT 176243 37 100.0 38 ..................................... GTCACTCCCCCCTGTTGCCAGCCCTCTTGTCCGCGTCC 176168 37 100.0 40 ..................................... TGAACACTCTCATTCGTTTGTAAGTAAGGGCAATTCATAG 176091 37 100.0 40 ..................................... CAACAAATTCCCAATGCTGACTTTGGCTAACGCTACCAAA 176014 37 100.0 35 ..................................... CTTCGCCATCGCTCTCACCCAGTCCCATACCTGGG 175942 37 100.0 35 ..................................... TTTTGAGTGTATCCAACATACCCAAGCCAGTACTC 175870 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 23 37 99.9 37 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : CCAGCCACACCCAATCAATTACCACAACAGCAACTTTCCAAACGCGAACCCGTTAAGCATTTACTCATCGGTTCAGCGCAAGCTGTCACTATCACCATTCATCGTTTACACCTCATTGGTTACGCCAGCGTCGGCGACTGGAGTCCACTTTTACCAACCGCCAACCCCGATGAAGTCATGAGTATTTTAATCCGCCAACTCTTGATGTAATATCTAGATCCCCGATTTTCTGGAAAAGTCGGGGATCTGAACAGTACGACAAATTTAGTCAAAATGCGCGGATGGGTAGGTGTGCAAAATCGCCTTTGAGTAAGAATGGCTGGATTGCTTAGAGGGTAAGGTTTTGCAGAAAAAATTAATTAAAATTGTCCGCGCGGCTTATACAGTATAGGTTTCAGCAATTTAGCGCAAATCAATTGACATTAAACCATGTTAAAATTATCCCATCCGCGAAACCGCACCTTGAAAACTAAATACAGTAAGCTTTTCCGGCTCCCGCT # Right flank : AATGTCGCAGTGTTGGACAAAACATTTTAGATCCCCCTAAATCCCCCTTAAAAAGGGGGACTTTAAGCCAATACGGTTCAGTTAAGAAAGCCAAGTCATAACAGAACCAGCAAATGATAAATCAACAAAAAACGAAAAAATGATTTTGGAGGGGGTTTGGGGGACGCAACCGTCCCCCAATCGGGGGCGTGGGGGAGAATCCCCCAAATCTTGCTCATTATCTGATAGGTAGCGCAGAAAATTGAGAAATCTACTCTTATAACCTTAACGGAACCGTATTGGACTTTAAGCAGGTTTTAGCCCCCCTGCTTTTTAAGGGTGGTTGGGGGGATCAATAAATCCTAATCATCACAACCAAGCACTTTTCAAACAACCTCTAAACTGCAATAAATAAACACACAGCGAAGCAAAGATTGATGAGTAACTTTAACAACGCTGTGGTGTCTCTACTGTTATGGGACTTACGCAAAAAAACGAAAAAATAAGGTTTTAGAATAGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //