Array 1 31794-32963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWLI010000009.1 Providencia rettgeri strain 2021EL-01139 NODE_9_length_86810_cov_55.052432, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31794 28 100.0 32 ............................ GATGTGAGAATTAGTAATAATCAGTCTATGGA 31854 28 100.0 32 ............................ GTCAACGGTGATTGATTCATCTTTAGATTTAG 31914 28 100.0 32 ............................ AATACGGTGACGATGCTAGCCACTTACCAAAA 31974 28 100.0 32 ............................ AAGTTAGCCACATGATTGGTGGAAACTTTTTG 32034 28 100.0 32 ............................ GATGTATTAGCGACTCGTGGGTTGCGTTCTCT 32094 28 100.0 32 ............................ GCTTTCATTATCGGATTCCCCATCTACTTGGC 32154 28 100.0 33 ............................ ACCATCTGGAGATAGACCGTCACTTCTTTTCAC 32215 28 100.0 32 ............................ TTTATTGGCATGACCGCGCACCTTTCGGGCTA 32275 28 100.0 32 ............................ CACCCAAGAAGCTGCTGAAAATGCGGCGGCTC 32335 28 100.0 32 ............................ ATTCCTGCGAATATCGCATATTTGATTTGTTT 32395 28 100.0 33 ............................ AATGTCGGTCTTTCATTGTCAGTGCCGTTCATC 32456 28 100.0 32 ............................ ATTTAATTTAAAAGTGGCTATAGAATGTGTAT 32516 28 100.0 32 ............................ TGACTACTCGCCGTAGCTCTAATCCTAACCTG 32576 28 100.0 32 ............................ TGACTACTCGCCGTAGCTCTAATCCTAACCTG 32636 28 100.0 32 ............................ TATAATGATTGTGAAGTCCAGTAACGAAGCTG 32696 28 100.0 32 ............................ ACACACTCTGTGCGGTTGGTTCGCAAACCTTT 32756 28 100.0 32 ............................ AACAGAACGCAGATATGCCAGAACGTTTCCAG 32816 28 100.0 32 ............................ TATAATCTGAAACACTCTTCACCCCACCCACT 32876 28 100.0 32 ............................ ATTATAGATCCTCTATCAAAGCATTTACATGA 32936 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTAGATTTTTTAGCTGATACGCGCTCGATTCAAAATGCGGCCCGCAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTTAAAGACTTAAACAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATACTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGGTTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTTATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAGGATTCGCTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTATTTGTTTTATTCTGTTTTTGTTATA # Right flank : AGCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGGTCACAAGGATGGTATAAAAAGAGCATCAGTGAGTATTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGAGAATTAAAAACTATTTTACATTCGAAACGCGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATCGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCTCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 41648-42217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWLI010000009.1 Providencia rettgeri strain 2021EL-01139 NODE_9_length_86810_cov_55.052432, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41648 28 100.0 32 ............................ ATTGCGCGGATAGGTTCCACACCTGCCCAATA 41708 28 100.0 32 ............................ TCGTTTGAAATCAGTCATACTCAACACATCAA 41768 28 100.0 32 ............................ ACCAAGCTCTATCGCTCATGGGTTCTTGATTT 41828 28 100.0 32 ............................ ATACAATGAGTTTAAAAATAGTTTACCTATTG 41888 28 100.0 32 ............................ CGCACAACAAACGATAAAAAGTTGCCACGGCT 41948 28 100.0 32 ............................ TAAATCTTTTTGCCGAGAGAGTTCTGACTGAT 42008 28 100.0 32 ............................ TTTAACACCGAGAATAACAATTCTTATATCTT 42068 28 100.0 32 ............................ GTCAGAATCAAGCAAAAATAATCGTTTTGACC 42128 28 96.4 32 .............T.............. TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 42188 28 78.6 0 ......T...GT......A..AG..... | TA [42208] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAGGCAGTACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTAAAAGGGCTGAGCCGAATTGAAGCCGATATGCAGCAAAAAGCACGGTTATGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGAGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATAGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGTTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCTATTTTTGACCTTTGTTTTTTGCTCTTTTAAAATTAGTCAGTAAATCAGTAGGTTATAACTATCAGTAAATAAAAGGGTATTTTCCAACAAATACCCTTAACTGATTGTTATCACTTATTTTTTATTTTAAAGTGCATC # Right flank : ACTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGAGTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //