Array 1 306204-308568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030808.1 Listeria monocytogenes strain 14 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 306204 29 100.0 37 ............................. AAGTACAAGCATAGATTTGCGAATTCGATTGAGCGTC 306270 29 100.0 38 ............................. CAAATTGAAGATATAAACTACATTCAGACAGTCAGAGC 306337 29 100.0 35 ............................. ACGATTACTACTACACCTGCCAATGCTAGTCAAGC 306401 29 100.0 36 ............................. GAGTTCATTGTTTAAAATGATATATTTATCGCCTAC 306466 29 100.0 34 ............................. CGGCTATCTTCCGCGTATTTGCGTATGGAATCAT 306529 29 100.0 38 ............................. AGGTAAATCGATTATGTACGTCGAAGAAACGGAGCACC 306596 29 100.0 35 ............................. AAAGATAGCGCCTTTACTTTATTTAAAACAGCTTG 306660 29 100.0 36 ............................. AATGTTGAAAGTTTCTTCATTATCCGCAATATTATT 306725 29 100.0 37 ............................. TGATTAAAATTTCACTAGGTTTGTCCTTAGGTCTAAA 306791 29 100.0 35 ............................. ATCACAGGTAACATTGCAGTAGCTAAAGCTCCCAT 306855 29 100.0 34 ............................. AACACTTAAGCCGAAATTTATTTTAGTTTCATCT 306918 29 100.0 35 ............................. CTAGTTTCAACACTAACTTTTGCGTTTCTGGCGAC 306982 29 100.0 37 ............................. TCTTTATTCACTTTCACAAAAGCTTTGCCTGCAGCGC 307048 29 96.6 36 ................T............ TGTTGTATTTTTGCTGAAGTTCTTCATATGCATTGA 307113 29 100.0 37 ............................. GCGTCCAGTAGGTATGCATAACGGTTGTTTTTCCACC 307179 29 100.0 34 ............................. AATTGAGTGTTGAGCTCACCCACAGCATCACCAA 307242 29 100.0 35 ............................. AAAATATCTCGTAACACGTCTACTTTTACATGACC 307306 29 100.0 35 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCT 307370 29 100.0 36 ............................. ATTGTATATATATTTCCATATTTTGTAGCCCAAATT 307435 29 100.0 37 ............................. TTGCTTAATTTTAGGCTTAGGTGTGGCGGTGTCATAG 307501 29 100.0 37 ............................. TTCTTTTATCCCAACCTATAGACGTATAAGTATCTAT 307567 29 100.0 34 ............................. AAATTCCTCCATCTGTTACTTTATAGATTTCATG 307630 29 100.0 34 ............................. AATGCTACGGATGCTGAACCTAGTGCTACTTTTA 307693 29 100.0 34 ............................. ATGTACCTCGCCTTTTTTGTCTTCATAGCGCCAC 307756 29 100.0 36 ............................. ACCGTTTTGGCGCGCCGCAGTGATAAAAGAAGTGGC 307821 29 100.0 34 ............................. ATAGCTTATCAATCCGTTGGACAGATGAACCTTT 307884 29 96.6 35 ..................A.......... TTCGTTAGCATTAACGCTGAAAATCAACTTCATGT 307948 29 96.6 37 ................T............ TTTGTTCGATTTCGCTAATTTGGTAGTTTGTGACTTC 308014 29 100.0 37 ............................. GTGGTTGGCAAGAAACCTTTTTTGACAGGTAATTTTT 308080 29 100.0 37 ............................. AAAATAATCATTAATGCAAACGCAATACAAATGACTG 308146 29 100.0 38 ............................. GTGGTAACAGTGTTCTTATTTCCTGGCGGAGCGCTTCC 308213 29 100.0 34 ............................. TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT 308276 29 100.0 37 ............................. TCGTTCGACGGCTTAGACAACCATCACGCTTCTTTAA 308342 29 100.0 37 ............................. TTTTCATCGCTGTTTTAGTGTCATATCCTAGTCCTTT 308408 29 96.6 37 ...................T......... ACTTTCTTCACGAGTTATATGTATAATTTCATCCACC 308474 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 308539 29 93.1 0 .......................A....C | C [308562] ========== ====== ====== ====== ============================= ====================================== ================== 37 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGGAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //