Array 1 37086-38372 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBET01000005.1 Pseudomonas aeruginosa strain HIAE_PA01 5c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37086 28 100.0 32 ............................ ACCATCGCCACCACCAGTTCCACCGCCATCAC 37146 28 100.0 32 ............................ CTGAGCGGCGCAGCAACTTCAAGCAGGCTCAG 37206 28 100.0 32 ............................ TGGAGGGACCAGTCCAGCTCGATAGCGCTATA 37266 28 100.0 32 ............................ ATTCGGATACAGGTAGCCAACGGAATGGCCAA 37326 28 100.0 32 ............................ CTGGTGATTGGGTTGCTGATGGATGCGTTATC 37386 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTT 37446 28 100.0 32 ............................ ATCACGACCACCCGAATGCATCACCAACCCAC 37506 28 100.0 32 ............................ GACGGAAAAGAAGGGCCTGGAGCGACTGGTAA 37566 28 100.0 32 ............................ CACAGGCCGTAGATGCGTCCGGTGCCCTCGAC 37626 28 100.0 32 ............................ ACGATGATCAGCTTCCACGGCGGCCGCGGCTT 37686 28 100.0 32 ............................ AACGCGTTGAACCGCTGTCGTCGGTGAACTTC 37746 28 100.0 32 ............................ ATCACGGCCACCCGAAGGCATCGCCGACCCAC 37806 28 100.0 32 ............................ AGGGCGAAATGGATGTCAAAAAAGTATTCGAA 37866 28 100.0 32 ............................ TGCAGAACCAGCGGCAGTTCCGGGGCTTTCGG 37926 28 96.4 32 .........T.................. ACAAAGAGGGCAGCGCAGACGTTTCATCACGC 37986 28 96.4 32 ..............C............. TTGATGCCAACGATGGCCCAACGCTTGTCCCC 38046 28 100.0 32 ............................ TGGCAGTGGTGCGTACGGTGACAACTTGATGA 38106 28 100.0 32 ............................ AGTAGCTCCGGCACGCTGTGCTGAGCCTGGGC 38166 28 100.0 32 ............................ CACGGATGAGAGTTCGGGTGGCAACAATCCGG 38226 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACTTG 38286 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 38345 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCACCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49082-47252 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBET01000005.1 Pseudomonas aeruginosa strain HIAE_PA01 5c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49081 28 100.0 32 ............................ TCTGCGCCCTGGTGGGCCTTGAGCCGACTGAC 49021 28 100.0 32 ............................ TGATCCATCACCGCTTTGACGCCGACGAAGGC 48961 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 48901 28 100.0 32 ............................ ATGGTCACGCCTGGACCAATCTGGAATGCATT 48841 28 100.0 32 ............................ ACCTCGCGCCCTGATCACCCAAGCGTGCGTAT 48781 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 48721 28 100.0 32 ............................ TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 48661 28 100.0 32 ............................ CGACCGAGGGGAGAGTCACCAGTCCGGAAAAT 48601 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 48541 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 48481 28 100.0 32 ............................ AGTTCCCGCTGAGGCTGACCGGGAAATCTGCT 48421 28 100.0 32 ............................ CACCAGATCCACGACATCAAAGCTTACTTCGG 48361 28 100.0 32 ............................ TTCACTGGCTGCGCATGCGCGGCGAGGTATCA 48301 28 100.0 32 ............................ TGACCACGTTGATGCCCGGGTAGCTGCTAAAT 48241 28 100.0 32 ............................ GTTTTGAACTCAGGATCGCTCTGCATCATCAT 48181 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 48121 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 48061 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 48001 28 100.0 32 ............................ TTCGTCGTCGTTATCACGCCGCCGGCCGCGCG 47941 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 47881 28 100.0 32 ............................ CAGTCGATCAGCCCAGCCAGCTTGGCGTCGTT 47821 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 47761 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 47700 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 47640 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 47579 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 47519 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 47459 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 47399 28 100.0 32 ............................ TTACAGATCGGGTGCTCTTCCATGGTGAACCT 47339 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 47279 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTAAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAGAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //