Array 1 62792-62307 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895921.1 Salinispora arenicola CNS051 C570DRAFT_scaffold00012.12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 62791 36 97.2 40 ......................T............. TCGCCCTGGTCAACAACGACCAGCTCATCCCCGAGCAGCA 62715 36 100.0 37 .................................... GACGCGAGCAGCTACCCGGAGCGCTGTGGGACCACCT 62642 36 100.0 40 .................................... CGGTGGAGGCAAGCTGGTACTGGGACATGAGCGTGCCCCT 62566 36 100.0 38 .................................... GCCATTGGCAGGGGCGACCGGGGCCTACAGATCCAAGA 62492 36 100.0 41 .................................... TCGCGTCTCCCGTGATCGTATCCGCAAAGGTCTCCCGAAGG 62415 36 100.0 37 .................................... CCAACCCGCGCAACCGGGAGCTCTACCGCCGGCACGG 62342 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 99.6 39 GCCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGGC # Left flank : GGCCGTACTCCGGCGTGATCTCGTACAGGCACGCCCGCCACACGACGGTTCTACCGCCGCCGGGCACTACCTGCCCGTCGCCTGGCCCGCCGCGCAGCAGCACGTCTACCCTCTGACGGTACGTGCGTGACGAGCGCGGGACGCGACGGACGAGGTTCTGATGCCCCCAGATGGCTGGCCTCCACGCGGGCTGGTCCCCGCAACTGGGCGTCGCTGCGAGGACCAGCTTGTCGGTGGCCTGCGGCCAAGGCTGCTCCACCTGCGCGTGGCCGTGGCCAACAGCCGAGCGGTGACCTCGTCGACCTGTTCAGGTTCGCCGCAGGCCCGACCGCTCGCCAGCGCCGGTCCTGCGCTGTGGATATCTCCGATGCTTGTGGATGATCCCCTGATCATGGCCGGATCTGCTAGCCCTCGTATCACCAACAGCACGGACCGCAGGGGCGGGCCGTAGAAGGGACCACACTCGTATGGCAACAAGAGCAAGGCGTGGACGTTTTGAG # Right flank : TGGGTCAGAATTATAGCCGCTCTGACCTGCACCTGAACCGGTCTGCTGCGAAGGGTGCGCTTCCTGCGAGGCGGAGTAGCGCTCAAGGCCGCGTACCCGCAGACCTACCCGGCATGTGAGCTGGGCTGACACCTTGGCGACGGGTCCGCGCTTGGCGGCGAGACGACGCAGGCTTCGCCGGTGGTTCAGAGGATCGCTGGTCCGTGGTTGGTGATGGTGCGGCTGCAGCCGATCACGTCGAGTGGTCGACGGTTGTTCTCGCGGAGGGTGCCCAGGTTGCAGAAGATGACGGAGTCTCTTTCCGCGTCGATCATTGCGGTGAGTTGGGTGCGGAGCCGTAGGAACTTTGCTGGCCGGGTGTCCACGATGAATACGCTGTGCTGTATGCGGTCGCCGTATGATTCGAGTTTCTTGGCGACCTTCGTTCGGCGGATGTCGTCGGATATGTCGTACGCGATGAGGTAGCGTCGCACGTCGTCAAGGTTCATCGGGTTTTGATG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 1-1237 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895925.1 Salinispora arenicola CNS051 C570DRAFT_scaffold00016.16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1 37 100.0 37 ..................................... CGGATCGCACCGCTGATCGCCGCACTCGCGCTCGTCG 75 37 100.0 36 ..................................... GCTGCGAGTCCAGCCTGACAACCCACTGGCGGAGAC 148 37 100.0 37 ..................................... CGCGCATGTGCGCGCCCGTCCACGCCAACACGACTTG 222 37 97.3 37 ..................T.................. ACCCCCTGTGCTTGGCTGAGACACAGGGTGACCTCGT 296 37 100.0 38 ..................................... GACTGATCCGGCCTCGGACCTGTACCCGCACCTGGGTA 371 37 100.0 37 ..................................... ACGCACGCACCAACACCCTCACCGCCACCGGCGGTAG 445 37 100.0 38 ..................................... GCGATGAACCCGGGTCGTGTCCATGGGGGGCGCTCGGC 520 37 100.0 37 ..................................... AACATCAATTCCTCGCTTGCCCCCAACCACGACGAGT 594 37 100.0 40 ..................................... ACCCTCCCACTGCGGCACCGGGAGCTCTGCAGTAACCCCC 671 37 100.0 38 ..................................... GGGCGCCCGACGAGGTTGTCTGGGCAGCGTGACGACCA 746 37 100.0 39 ..................................... TGGAACGAATTCCTCGCCGACACGTTCGGCGACAACGAT 822 37 100.0 39 ..................................... GACGACCTCGAACGTGTCCCGGCCGTGTGCGGTGTTCAT 898 37 100.0 37 ..................................... GGGCCAGGCGCCGGCAGGCGTCGCCACGACACGCAGA 972 37 100.0 38 ..................................... ACGATCTGTTCCAGGACCCAGCCGACGGGGTTGACGTG 1047 37 100.0 40 ..................................... GGTCACTGGTCTGCGCCCCTTTCGTTCCCGGCTGCGGAGC 1124 37 100.0 40 ..................................... CCATGCGAGATGCAGTACTGCTGACCAGCCAGCTGTCACC 1201 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 99.8 38 CCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Left flank : | # Right flank : GGGGGCTCGGGAGCAGCGCTTATAGCTGGCGGTGGTGGGCAAGGTGGTCCAGCCCTTGTCCGTATTGCCCGCTTGACACGCCTTTTGGAGTTCGGAACCTCCCGCGTGTCGGGTGTCCACCGGGGGTTCCTAGGTCTGGGTGGCAGCCCGAATGGCGTAAATGTGTGCAGTTATCAAGGTTCAAGCTGTATGCGGAGCTTGGCTGCTCTACGAGTTGGTGAGGGTGACCGGTAGGGGAACGAGGACGCCGGCTGATTTGCGTCCCTCTACTGGCCGGCGGTGAGCTGCGGCGACGGCGAAGACTCCGAGGGCGGAGATTTTGTCTTTGGACACTGTGACGTGGCTGCCGTCGCTGTCGAAGGTCAGGTCTGGGTGTTCGATCAGGGCGCTGGTGGCGATGAGATCGAGGGGTTGGCGCCATAGCGGCCAGATCATGATGCGTCGTCCGCCGGATTGCGGCGGCCTCCAGAGGGTGGCGGTTGCGGTGTTGCCGTTGCCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 90570-89724 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895928.1 Salinispora arenicola CNS051 C570DRAFT_scaffold00019.19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 90569 37 100.0 38 ..................................... GCGACAGTCTCGCGAGGCTTGCAAACGCCGGCCGCATC 90494 37 100.0 35 ..................................... AGCTGCTACTTAACCACGGCGGCCTGTCCATGGCC 90422 37 100.0 34 ..................................... CTCGGGGCCACCCCTGCGACTCCGGTGCAGGACG 90351 37 100.0 38 ..................................... CTTTCGGGTGCGTCAGAAGTTCTCCCGGCGGATTCCGA 90276 37 100.0 38 ..................................... ACGTTGTTTTTGTACCGCGGGGATGGTGTCAGCTCCCC 90201 37 100.0 34 ..................................... AGGATGCCGCGGGCGGCGCGGCGGAGGACCTCGG 90130 37 97.3 35 ..........................C.......... GGCGAGACGGCGCCGGGCCGCGGTGACATGGTTCG 90058 37 100.0 38 ..................................... CTCTTGGTTCGGGGCACCTGGCTTGGCCGCCCGGGACT 89983 37 100.0 36 ..................................... CTCGTAGGCGAGGTAGCGCAGGTTCCCCAGGCCGAA 89910 37 100.0 39 ..................................... ATCTCCGCCGAGCCCCTGCTCGGCCCGCCGGATGGGCTG 89834 37 97.3 37 ....................................T TACGGTGGCCTGGACCCTGACGGCCAGCCCGCTGGCA 89760 37 97.3 0 .....G............................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.3 37 CCTTCACCGGCCCGTAGCGGTCGGTCTCCATTGCGGC # Left flank : AATGGCAGCTCGTGAATCATAATCGGTCTGGCCCGGGGCTCGAACCTTGACAACTTCACAAACGCGCGCTCGCTTTCTGTGAGCACCTTGCAGTTGATGTAGGAACCTGAAGTGGGTGCCCCATGCGCCGTAGGTTCCGAGCTTCGGAGTGGGGGCCAAAGTAGCAATTCGGGCAGGTGGTCAGTGTCTAGCCAATGGTGGGTGGCTATCCTTGCTGCTCGCGAGC # Right flank : ATGGGGCGAGTGCCGGGTAGCTACCATCCATAGCTGACTACCACGTCATCGTTCATGCACTGTGACGGTGGGGCGGCGGTATCGATCGCCCCTCGGACACGTACAGTTACCCCACAGTAATCAGCGTCGGGCTTGGCCTCGACGCTGATTTTGTTTTGGCCGGGGTTGTAGGTGAGGGCGAGGCGTGTCTCCAGGTAGATGTTGCCCTTGTCCTCGCTCCGGGCGTCGCGCAGGGTGTTGCGGATGTCGTCGAAGCTGCCGACGAGGCTTCGGATGTCGTTCTCGGTGAAGCGGCGGGGAGCTGGTTCTCGTGCCGCTTTGTCGCGTTGGGGATGGCGGCGGCGCGTTGGGGCGTTGACTTCGGCCGTGCCGGACTGACGGCACGTCGTCATCGAGTGGAACCGAGGCTGTCTACTGGTCGTCCGGTCCGATCCAGAACAGGCCCCGGTCGGCACCGTCTTCGTCGTACTCGAGCACGATGAGCCAGCCGGGCCGCGCAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCACCGGCCCGTAGCGGTCGGTCTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8819-8547 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895930.1 Salinispora arenicola CNS051 C570DRAFT_scaffold00021.21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8818 28 100.0 33 ............................ GGAACGCGGGATCACGGCCGGGTGCCAGGATCA 8757 28 100.0 33 ............................ GGCTACGAACGTCAGCTCGGCAACCATCTACCG 8696 28 100.0 33 ............................ CACCGGCTCCACAGAGCACTTGCAGTTGTCGTG 8635 28 89.3 33 ...........G..A..A.......... GACGAGGAGGCCGGCGTGGACCTTGACGTGGAG 8574 28 92.9 0 ...........G.............A.. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 CTGTTCCCCGCACACGCGGGGGTGATCC # Left flank : GGTCCCCGGATTGGTCGGTATCCCCGAATTCAAGCTGACGAGTAACGGACCCTGGTTGGTGGGGACGAGGGAAGTCGAGCAAGCGCTGGACTGCTACCAGGCGTCGTCACCGAGTCTGCGGGCAGAGCTGGAGAGGGATGACCTGTGGGTGGCCTGGCTTGACTGGCTGAGACTGACTGTCATGCATGGCGGCTTCACCGTCCGCTGACCCGCCCGCCATCCCTAGATCGTCTAGCCAGACATGTCACGCACGTCCAGAGACTGTTCTGTCATGCAGGTCCTGAGACCCGACACCATGCTTCGACCACATGTCCGGCCTCGGGACGTGATTGTCAAGATCAGTGATGGTAGTGGCCTCCGGACGGCAGTCATAGGCCCTTGAGGGCGCTCGTTATGCTGCACTCAGCCTTTGCGCCTTTACAAGTCGTAATACTTTGATCTTGTCGACCGAAGTGAACGAAAACAACATATTTGATCTTTAGGTCTGCAGGTCAGGAAGC # Right flank : TGTCGCCGGCCTCGCACGCCATAGGATCTTTCCTGCTGACCCTTACGCACGGGAGTGATTCCAGTCCGGCGCCTTCGCCGCCGCCCGCAATACGTGCGCACAACACCTTAGAGGCCGGGCGGGAACGACTGTTCATCAGTCGAGACGGGTCGCCGCTGCGAGGTCACACCCTCTATCAGGCATTCGTGCGGGCCCGTAAAAGGGTCGGAATGGACAACCTGACGTTTCACGACCTTCGCCACACAGGGCAGACCCTGGCCGCGCAGACCGGCGCCACGCTGGCGGACCTCATGAAACGTCTCGGGCGCTCGTCCATGGCGGCGGCTCGCCGGTACCTTCACGCGGTCGACGGCCGCGACCAGGAGATCGCCAAGGCGCTGTCGGAGCCGGCGGCGCATGGAGACGTCGCACGTCTTGCCAAAACGAGCACAATGTAACGAAGGGTGTGGTATGCCGTTAAAAGCGCGGGATGTGATCAAGATGATCGAGGCGGAAAAATG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9953-9099 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895936.1 Salinispora arenicola CNS051 C570DRAFT_scaffold00027.27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9952 37 100.0 38 ..................................... TGGCGGGAGGTCGGACGCAAAGGTAAGACCGTCTGGCG 9877 37 94.6 36 ....T..............T................. GTAGGCGACCCGGTGGGCACCCTCGCTGCCCTTGCC 9804 37 94.6 38 ....T..............T................. ATCGCTATGAGTCGCCGCATCGTCAACGCCGGAGCGTT 9729 37 100.0 38 ..................................... CGCTGGATCTCCGGCTCGGCGGTGGCCGGGGCACCGGA 9654 37 100.0 38 ..................................... TCCGCTGCCGCTGGTGTGTTCGGGCTGTCTGACTGGAG 9579 37 100.0 37 ..................................... CTCGAGGAGTTTGGCCTCCTCGATGCCCATGAGCTGG 9505 37 100.0 38 ..................................... GGCGGTGGTGGCTCTGGCTCCTCGTGCACCCGATCCCG 9430 37 100.0 37 ..................................... ACGGTGTGATGCAGCTCCACCAGCTGCACACCCTCCG 9356 37 100.0 36 ..................................... TCCTGCTGATACAGGCGTTCGTGCCTGCTTGTCGTG 9283 37 100.0 37 ..................................... ACGGTGTGATGCAGCTCCACCAGCTGCACACCCTCCG 9209 37 100.0 37 ..................................... CGGCGTCCGCGGCACGGCCAGATCAGGGACCGGAGTC 9135 37 97.3 0 ..................A.................. | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 98.9 37 GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC # Left flank : CTACCACTCGTGCAGGCCCGGCTGCTCGCACGCCACCTCCGCGGAGACCTGCCCGCCTACCAGCCATGGACGGTGAACTGACCATGGACCTCCTCGTCACCTACGACGTCGAAACAGCCACCCCCGAAGGGCAACGCCGCCTACGCAAAGTCGCCAAAATCTGCGAAGCGTACGGCCACCGCGTACAGAAATCCGTATTCGAGGTCGTCTGCCGCGAAACCGACAAAGCGCGCCTCGTCAGCGCCCTCGAAGAAGCCATCAACCCAACCCAGGACAGCATCCGCATCTACCGGCTACCAGCCCACGCCCTCGACGACGTCGAACACCTCGGCAAGCCGCGACAGACCGATCCACGAGGAGCATTAGTGATCTAGGAACCCCAAGCTAACGCCAGAAGCCCAGGAGGTTCCGAACCCAAAAGTAAGGATGAATTGAACCAATCGGACCCTGGCCAATCAACTCTACATCACCAAGCTCCTATTCCTGCTGCTCACGAACAG # Right flank : CGAGAATTGGTCGCTTCCGGTGCCGTTTGAGAATCGAGCCGGCTTGACGCGAAGCGACGTCACCGTAACCGACCACCGCCGAAACCGGCCAGCCTTCCGACGGACTGCCCCGGGCGCGGCGTCCCAGAGTTCGGGAGAGGCGGACAACGACTCGAATCGCTGTCAAACGCACCCGGACTGACCGGAACCCGGCGGGACGGAGGGGATGCGCGTCGCACGAGCACCCACCGAGCACCCAGCCGTCCACTAGGGACGGAAAAGCGACGGCGCCTGACCCCTGTTCTTGCAGGTCAAGCGCCTTACGATCTTGCGCGCCCGAAGGGATTCGAACCCCTAACCTTCTGTTACCGGCCTTACGATCCTGCACTTGTCAACGACTGCCACATTTCAGTGTTGACCTGCCCGGACGCGACGAATCAGTGATAGGCATCTGTCACCGATGGTCGACACCTGGCAACGGTTTTCGAGGGGTAAACGGGGGGTCCGGTGCACCAGACGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37575-37361 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895931.1 Salinispora arenicola CNS051 C570DRAFT_scaffold00022.22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 37574 30 100.0 31 .............................. GGTCAGCCACGATCGGACCTCTGCCCGGAAC 37513 30 96.7 32 .............................A CTGCATCGCACTAGTCGAGGCTCGTAACTGGA 37451 30 100.0 31 .............................. TGCCGAAGGACACCGTTACTGGCAATGCCAA 37390 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 4 30 99.2 32 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : TACCGACATCCAACATCTACTCGACCCCGACAGCACACCTAAACAGCGGCAACCCGCCGCCGAAATCACCTCACTCTGGGATCCAGAGATGGGAGCCATGCCGTCCGGAGTCAACTACAGCTCAGACCCCTGGGACTAGCATGGCTTCCCTTGTCGTCCTGGCAACCACGGCCGTACCCGATCATTTACGAGGCGCACTCAGCCGCTGGATGATCGAAGTAACACCCGGCATGTTCGTCGGAACGCTCTCAGCCAAAGTCCGCGACGAGCTATGGAACGCAGCAAGCAGCGTCGTCGGCGACGGCGCCGCCGTCCTTATCCACCCAGACGACACCGAGCAAGGCTTCTCCCTACGGACAGCAGGAGCACGCAGACGCCGCCCGGTTGATTTCGACGGCCTCACCCTAGTAGCCATGAGCCCCAATGAACGCCACAACGACGCTTCCACCCCAGCAGAAACCATCTGGCCGGAAGGCTGGTAAAACCGCAGGTCAGTAAGT # Right flank : CGTCGGGCTACAAACCGAAACGGTTGACACCGTCCTCCCCAGACGGCGCGGAACCTGTCGTTGGCCATGATCACGGCGCGGTTGAGGGGTGATCTGGGCGTTCGCCGAGCACGTCAGCAGTCACCCGTGGCAGTGGCTGCCGCAGATGGTTGACGAGTGGAACATCGCGGTGCGCGTGCAGAGCAGCGAGTCCGATCCGCGCAAGTGCGCGCTCACCGTTGATGAGCTCTGAGCTCTGAGCTCTGAGCGCTGATCGATTACGCCGACGAGCAGGTCATGCGGATCCGCGGTGTGGGCCGTAAGGGCTGGCTGCCGGCGTTTCGGGACGCGACGCTGCTGGGGGTCGGTCGGCCCCCGTTTACCCCCCGAAAACTCCTGCCAGGAGCTGACGAACAGTGACCAGGAGGAACAAGTATCTGACCGTGTTGGTGCAGCTCAGGGCTTACTCGCGACAAGCGATGACATGCCCGGTGTGACTACGGTTGGTAACAAGGGGTCGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46650-46862 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895931.1 Salinispora arenicola CNS051 C570DRAFT_scaffold00022.22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 46650 30 96.7 31 ............................C. GCGAGAACAAGCTCAACCGGTCGATCGCCGC 46711 30 96.7 31 .............................T TCCTGTCGACCGTCCGCGTGGTCCAGTTCCG 46772 30 96.7 31 .............................C CGATCCCAGCGCTGCCGCTCGTGCCCTGCCG 46833 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 97.5 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGA # Left flank : CAAAGGAGCAAGAAGATCCGGCATGGCCAACTGACCAGCGGTGTCGTGCCTCAACGAGCCATCGCCTACAACATCCTCATACGATCCGGCACTCCGCAGCGCATCGAACGCGCTCCCGTCCTTCTTCTGAAAACCTGGGGTTGCCTTGCCGACATCGTGTAATCCCGCCCAAAACATGATCAACGATTTAGCGTGACTGTCGTCGGTGGCCAGCCCCTCCGCGATGACCCTCCGTTGGTTCGGAGCCAGATAGCGATCCCACAACGCACCAGCAACGGCCGCGGTATCAATCAAATGCCAGAGCAACGGATACGGTCTCGGGAGATGGTTAGACTTGCCCCAGATCCCAGCATCGACCCCGTCATGGTCGACCCCCAATCCGACCCCTCCATTCGTACCCGTTCGGCAAGGGCATCAGCATGCAACCACAGCCATACGACACCACGACTCGACCGACGCAAAACCGCTCCCACGGCTGATAAACGCGCAGGTCACGAAGT # Right flank : ATCACCCGCTGGTGGGACCACGGCCCCCGTGTCAACGCCGCCTCAAACGGGACCACCGTGGTCCGGCTGAAACTGGACCACCTCGGTTTGGTTGATCTTTAGTCGTTGGTCTTGGTGGCTGCGGGGACGCGGCCGAGGTCGCGGTCTTTGAGTCGGTAGCTGTCGCCCTTCATGGAGATGACTTCGGCGTGATGGACGAGGCGGTCGATCATGGCTGCGGCGACGACGTCGTCGCCGAACACTTCGCCCCACCTGCCGAAGGGTTTGTTGCTGGTGACGATGAGGCTGGCTCGTTCGTAGCGGTTGGAGACGAGTTGGAAGAACAGGTTCGCGGCTTCGGCTTCGAAGGGGATGTAGCCGACCTCGTCGACGATCAGTAGCGGGATCCGGCCGAGTTTGACGAGTTCGTCTTGGAGGCGGCCGGCGTGATGGGAGTCGGCGAGGCGGGACACCCACTGGGCGGCGGTGGCGAACGCGACCCGGTGCCCGGCCTGGCAGGC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1068-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895944.1 Salinispora arenicola CNS051 C570DRAFT_scaffold00035.35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1067 37 100.0 38 ..................................... GCGACCCGATCCGGGTCCAAAAAGCCCGCGCCGAACAC 992 37 100.0 36 ..................................... AGCGGAGCGTGCCGGCGTCTCCGTCGAGACGATTCG 919 37 100.0 37 ..................................... GTGAACGCTGGCGGGGGCGGTCATCAGTTGTCTACCA 845 37 97.3 41 ...................................A. GCGCCGCCGCGGCGGTTGACGTCGGGGACCGGCTGACCATC 767 37 100.0 38 ..................................... GACCCGGGTGACACCGACGACGACGGGCTGCTGGCCGA 692 36 97.3 38 ..................................-.. GATGCGGCGAAGACGCAGGACGGCGGGCTGCTGGCGGA 618 37 100.0 37 ..................................... ATGCGCCGAGGTCGCCGACCTGCGCGACTAGGTGGCC 544 37 100.0 35 ..................................... GCCCGCTACGACCTTGACGACATCGAGTCCTGGCT 472 37 100.0 39 ..................................... CAGTCGCTGCTCGACGCGGGCCGTCCACGGCGACAGCGT 396 37 100.0 37 ..................................... CGGTGCAGGCCGCGCTCGGTGAGATGTCGTGGCTGAC 322 37 100.0 38 ..................................... CAATCGCCGGTGACGCCAAGGTGCTCGCGGACCACCCG 247 37 97.3 38 ...................A................. ACCCCCGGCTGGCCCGATGGGCCGATGAAGGGCTTGTG 172 37 100.0 39 ..................................... GACAAGGCTCTGAGGCTCAGCGACCAGGGCAACCTGCAC 96 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 99.4 38 GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Left flank : CGGCGCGTCGCCGATCTCATGTAGCGGCCATGTGCGCCCTGTATGGCTTGTCCCCTGAGATGACGTCGGCACTGCTCGCCCTGGCCGCCGAGACCAAGGCGAAGGGTTGGTGGCACGCCTACGGCGACACCTTGCCAGCCTGGTTCGAGCTGTACGTTGGGATGGAATCCACGGCTTCGCGCCTGCGGCACTGGGAGCCGGACTCGCTTCCCGGGTTACTCCAAACGAGGGCGTATGCCGATCACCTACTCCGGTCGCATCCGGGGCTTGCAGAGCGAGAGGTCGGACGCCTTGTCGAGCTGCGCATGGAGCGCCAAAAAATCCTAATGCGAAAAAGTCCGGCGCCTCCGCGCCTAGAGGTCATTGTGGATGAAGGCGTACTGCGGCGGCCATTTCCCGGCATGGCGGACCACCTCGGCCACCTCCACAACCAGGCGATGGCCGAGGTGCCGTTCGGGCAGGGCGGCCAGCCCGCCCCACGCTGGCGGAATCGCGGGCAT # Right flank : GGGCTGCGACTGTCTCGCCGTGGCCGGCGGTGCTGCGATCCCGCAACGGAGACCGACCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.50,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 93885-91538 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895916.1 Salinispora arenicola CNS051 C570DRAFT_scaffold00007.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 93884 28 100.0 33 ............................ AGACCGGGCCGCGGGGACAGCTGCAGCTCAAGC 93823 28 100.0 33 ............................ GACCGGACGGACCACGAGCCGACGTAGCGGGAT 93762 28 100.0 33 ............................ CGAGGCCCTGCGTTACCGGGCCGAGCAGCAGCC 93701 28 100.0 33 ............................ GGTTCCCGCGTTACTTCGACGGAGGCGACCCCG 93640 28 100.0 33 ............................ CCCGACAAGGAGGATTTGCGCGGGAATCCGATC 93579 28 100.0 33 ............................ CGCGACGCGAGACAGCCACACCAGGTAGCGAGC 93518 28 100.0 33 ............................ TTCCTCCCTGGCCACGGTCGGGTGCCTCAAGGA 93457 28 100.0 33 ............................ CTCAATGCGTGGAGATGGCACGTTCGACGGGAT 93396 28 100.0 33 ............................ CATCGGGGTATGCGTGATCGGCCGGGACGATCC 93335 28 100.0 33 ............................ CGCGCCCGGCGGATCACCGTAGATCGGATCTGC 93274 28 100.0 33 ............................ CGGGCGCTCCGGCCCCGACGTGTTTACCGTCTG 93213 28 100.0 33 ............................ CTACGACGGCTCGTCGCGCCAGCCGGCCCAGAT 93152 28 100.0 33 ............................ TGGCGGAGAGCTTTCGGTCCCGTCTTGTCGTAG 93091 28 100.0 33 ............................ CCCGATCCGGCGGGCGGGGCGGTTGTCGACCTG 93030 28 100.0 33 ............................ CGCGGTTCCCAACCCCAGCAGCGCGGCGAGGGG 92969 28 100.0 33 ............................ CGGGAAGCTCGCGGCGAGGGCGTCGGTGTCGAA 92908 28 100.0 33 ............................ CGAGGGCCTGCTGGCCGGCGGCCAGCGCGCCCT 92847 28 100.0 33 ............................ CATCCGGCTTGGGTTTGAGTTCGCCGGTCATGC 92786 28 100.0 33 ............................ CGGAGACCCCCTCGGTGCCGACCATCCGGTTGG 92725 28 100.0 34 ............................ CGAGTCTGAAATCATCAATACAGGACTTTTTTTA 92663 28 100.0 33 ............................ CGACACGGCCGGGGCAAGCGTTGGCGAGTCCGC 92602 28 100.0 33 ............................ GGCGGCGATGAACAGGAACAGGTAGTGAAAGGA 92541 28 100.0 33 ............................ GGTGCGGCGGCCCTGCTCGGCCAAGACCGTTTT 92480 28 100.0 33 ............................ GACGTTCGCCGCCCGGCTGCTCGGCCTGTACGC 92419 28 100.0 33 ............................ CGCCGGATCGACCAGCCACGCCACGATCCACAT 92358 28 100.0 33 ............................ GCCGTTCTCGCCGCGCTCGAACATCGAGCGCAC 92297 28 100.0 33 ............................ CCCGATGCAGGCTCGCAGCCAGGGGCAAAACCT 92236 28 100.0 33 ............................ ACACCACGCCGCCGTAGCCGTCATGCAGGTGAT 92175 28 100.0 33 ............................ CCGCGCCATCGGAAACGCCGTCGTCCCGCAGGT 92114 27 96.4 33 .....................-...... CTACGGCAACGGCGCGAAGCCCGCGGCCTGACA 92054 28 100.0 33 ............................ CTAATCGTGCCTCCATAAGTGATCTTATCGAGG 91993 28 100.0 33 ............................ CGCGCGGGGCGCCGGCCGGGAGCACACCCGCAC 91932 28 100.0 33 ............................ CTGGCAGGCCGCCGAGGCGGACCTGAACAACCC 91871 28 100.0 33 ............................ CCACCAAGCGTCCGCGGACCCGGATTGCAGGAA 91810 28 100.0 33 ............................ TCATCAACTTCATAAGTATGAACGAGGCGAAGC 91749 28 96.4 33 .....................T...... CTCGGGCCGCAAGTGCATGTGGGCCACGGATGC 91688 28 100.0 33 ............................ CATCAGGATCAGCCCGAACCAGAAGTTCCAGAT 91627 28 92.9 34 ..............A......T...... ACGGCGGCGGCCCGCCACCGGGGCGGACCGTCCC 91565 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 39 28 99.6 33 CTGTTCCCCGCGCAGGCGGGGGTGATCC # Left flank : GAGCGCCGTTTGCAGCACATCCGTCGCCTTGGGCCCGTTGACAAGCAAACTCATCAACGCCCGCGACGAGAGGTGGACGGTCATCGGTTCAGCCCCTTCTGCAGTGCATCCGTACACAGATCATTGTCGTCCAGTGTGGATGAACGTTGAGGCCGACCCGTGGATAGCCGCGACAGCTGCAACTCACCTGCAGTTCGGCCAGCCGCCGCATGATCGACCGTTGCGATGACCACTCGGATCCGCTCCCCGGAACCCCGGCGGACAGAGGATCAAGGTTGAGCTGTCATTGATACAGTGGACTGCCGAATGCCAGCCGTCCGTTGCCAGCGATGTTCTGCCGGCCTCCACAGCTCTGCCAGCCACACGGCTTGGGCCTCACTAACTATGCTGCAGCCGAGAACGCTAGCCTGCCATGTCAACTGCTGCAGGAAAGGACGATCTTGCAGGCCCTAGTGAATGAAATCCGGAAGATTGATCTCTAGCGTCGCAGGTGAAGAAGT # Right flank : CAAAGACGAACGAAGCGATGCCAGCAGTGGACTTCGCCCTTAACTGTGGTTCGGCAGGGCAAGCGCATCTCACCGCGAGTCGACCGCGGTCGACGCCGGCTCAAGCACTTCCGGAGGGCTGTCACTGTGGCAGAGCCGGCACGCCCGGTCCGTCAAGGCTGATCGTCGCTGCTGGATCCACGGCGAGCGCCTGGAAGATCTCGGTGGGTATGAGCACGTCGGCCGCGAAGTGCACTCCTGCGGGCGTCTCGCCCGCGAGGACGGCGGTCGCCGCCGCGGCGGCCATGAATCCGCTGAGTTCGTAGGAGTCCTCGCAGGCCAGCGACAGAACCCGCGGCGGCGTCTCGGCGTCGTTCCCGTCCCAGAGGTGAAACTCCTGGCCATACCACGTGCCGTGGCGCCGTACGTCCTCGGCCGCCGCGTTGACGACCTCGGATGTGTCCGTGTCGTCGAGGGCCCAGGATAGTGCCAGTTGCTCGGGAAGCCGGCCGCCGCCGAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //