Array 1 437-2860 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZWA01000019.1 Neisseria meningitidis strain Neisseria meningitidis isolate B296, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 437 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 503 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 569 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 635 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 701 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 767 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 833 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 911 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 977 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1043 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 1109 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1175 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 1241 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1307 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1373 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1439 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1505 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1571 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1637 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1703 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 1769 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1835 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 1901 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 1967 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 2033 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 2099 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 2165 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 2231 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 2297 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 2363 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 2429 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 2495 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 2561 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 2627 36 100.0 30 .................................... CGATGTTGTGATCGCCTTCCTGCAGGCGTA 2693 36 100.0 30 .................................... GTTTTTGTCTCTGACCTTAATCATTTTGCT 2759 36 100.0 30 .................................... CAGTAAACAGTTATCTAGCCCTTACTACAC 2825 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 37 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : AAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //