Array 1 75322-74009 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCF01000003.1 Salmonella enterica subsp. enterica serovar Indiana strain 2009K0767 NODE_3_length_212566_cov_4.13889, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75321 29 100.0 32 ............................. AGCACACATTGTGTGACGGTCGCCGTCTGGTT 75260 29 100.0 32 ............................. CCGGTTGTCCTTGTAATGGGGGGGGGCATTTG 75199 29 100.0 32 ............................. GGCGACGGGTTCGTCCGACCGCATCCGGGCCA 75138 29 100.0 32 ............................. ATTTTATTAGCGACTATCCAGGAATAAATTAC 75077 29 100.0 32 ............................. GGTGTTACTGATGGTGGGGCGCTGGATGAGGC 75016 29 100.0 32 ............................. AGCGCGTCAGGAACGTTTCTGGGGTGGCCTGA 74955 29 100.0 32 ............................. AGTGTCCACACTGCGGCGCTGAAAAATGCAAC 74894 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 74833 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 74772 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 74711 29 100.0 32 ............................. AAAATCGTGAGTGACTATCGTTCTGTTATTGC 74650 29 100.0 32 ............................. TCTCTGTGATTACCCCGGAGCATGGCGGTGCG 74589 29 100.0 32 ............................. TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT 74528 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 74467 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 74406 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 74344 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 74282 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 74221 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 74160 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 74099 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 74038 29 100.0 0 ............................. | A [74011] ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92929-91863 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCF01000003.1 Salmonella enterica subsp. enterica serovar Indiana strain 2009K0767 NODE_3_length_212566_cov_4.13889, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92928 29 100.0 32 ............................. TGTAACCACTGCGATATGGGCGATGACACAAA 92867 29 100.0 32 ............................. CGGGAAGCGCAGCAGAACGCCCGGTCGCAGCG 92806 29 100.0 32 ............................. ATCACCGGCACGCGCGATAACGGGTCTGATTA 92745 29 100.0 32 ............................. CCGAAAATTACCGGGCAGTCACCGTGGGGGCA 92684 29 100.0 32 ............................. ACGATCCAGATATTTGGCTGGATGCAATCGGT 92623 29 100.0 32 ............................. CCCCATCGGTAACCTCTCACTATCGGTGTGTC 92562 29 100.0 32 ............................. GCTTTTATGTCTGGTGGATATAACGCACTGAA 92501 29 100.0 33 ............................. CAAAAACAGGTAAATTTGTTCGCTTCGTCAAGC 92439 29 100.0 32 ............................. CGTATCCCGAAATCACGTTCAAGAAAAATCCG 92378 29 100.0 32 ............................. CCGTTGATCAGAACGGCAACGAACGCACGTAC 92317 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 92256 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 92195 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 92134 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 92073 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 92012 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 91951 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 91890 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //