Array 1 114061-110428 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPK01000154.1 Salmonella enterica strain NGUA-38_S2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114060 29 100.0 33 ............................. CGTACCTGATACCAGCCGTCGTTCAGTTTCTGC 113998 29 100.0 32 ............................. GCAGCGATAGGGGCATTGACAAACAGCCTAAC 113937 29 100.0 32 ............................. TCCATCAATCACACGCTGGCGATCTTTCACTA 113876 29 100.0 32 ............................. AATATTATCGATAAGGGCGTTTTTGTCGTGGA 113815 29 100.0 32 ............................. CCACGCGGCCCCACGATATTATTCACACACAA 113754 29 100.0 32 ............................. AATTTATAGTCCAGTCGCGGTCCTCAACTGAA 113693 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 113632 29 100.0 33 ............................. CCCTGCCGAATAAAACCGCCATGCGATAATCGC 113570 29 100.0 32 ............................. CCATGTTAGAAGCCCTGGCGGGAAATCCGTGC 113509 29 100.0 32 ............................. GAAGTTTTATGTAAGCAAGGAGTGGAGAAATG 113448 29 100.0 32 ............................. CCCCGTAGTAGGGGTTAAAAAACGCGGTAGAG 113387 29 100.0 32 ............................. ACCAGCTAAGGATGCTGAAGAAGGTACTGCAA 113326 29 100.0 32 ............................. ATCCATAACCCCTGGGGCGGTGCGTGGGGCGA 113265 29 100.0 32 ............................. CACAAAATAGCCATCAATGCAGTTTGTATATT 113204 29 96.6 33 ............................T GACCGGCCGCACCGAAGCCGAGTATCTGGAACT 113142 29 100.0 32 ............................. CCATTGATGAGGCTATCACAGCCGCACAACGG 113081 29 100.0 32 ............................. AATTCGTCAGAAATCCCCATGCGGCGTTGAGC 113020 29 100.0 32 ............................. TCAGCAGTCTTAAAGACGGGGCGTTGGGCAAA 112959 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 112898 29 100.0 32 ............................. GGTTGATAGTAGTAATCGCCACCGCTCGCTGT 112837 29 100.0 32 ............................. GCAAGCCACAGCGCGAAAGAGGTCTATTCCTG 112776 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 112715 29 100.0 32 ............................. CCCGCCGCCGTGGGGAGATCTCATCCGGCGTG 112654 29 100.0 32 ............................. GAATGGCACTCATGGTTAACCCTCTGATTCAT 112593 29 100.0 32 ............................. GCGGGGTTCTCATCATGTTCAGATTGTCGCTT 112532 29 100.0 32 ............................. ATCCGCCCCTGTTCCGTAGTAACTGCCCAAAT 112471 29 100.0 32 ............................. TTCAACTAGTGTTTTGCCTACGCCGGCAAGAT 112410 29 100.0 32 ............................. AAAAACGGCTCAGAATTAAAAAACTTTTAGCG 112349 29 100.0 32 ............................. GGGTATCGCGTCTGTTTTGAGTGCTGTGTTGC 112288 29 100.0 33 ............................. TTCGATATCGACATGAGCGCGTTAACTGGCCTG 112226 29 100.0 32 ............................. GGTGAGCCGAACATTCGCAAACGCCTGCAATC 112165 29 100.0 32 ............................. ACGCTGCGACAACCGCAGCCGGGTCAGTGTTA 112104 29 100.0 32 ............................. AATATTGAGACCGGACAGGTATGGCGCACTGC 112043 29 100.0 32 ............................. CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 111982 29 100.0 32 ............................. CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 111921 29 100.0 32 ............................. CGCTCCCAAGACCACAAACAGAGACTCCAGCA 111860 29 100.0 32 ............................. AGAAGTATGTTAAAAATCTTCCTGGCGCTCAG 111799 29 96.6 32 ............T................ TATTCCGCGTTCACGCTGGTGCCGTCAAATCC 111738 29 96.6 32 ............T................ CCGTCAGCCGCCATCAACATGGCCTATAACGG 111677 29 96.6 32 ............T................ GATTTCAGGGTTATCCTGCAACCACCCCCTGA 111616 29 96.6 32 ............T................ TGCGGAATCCCCGGTTATTCAGGTTTCCAAGA 111555 29 96.6 32 ............T................ TGCGGAATCCCCGGTTATTCAGGTTTCCAAGA 111494 29 96.6 32 ............T................ TGCACATACATCCCCGCTTACTGGGTCGGGCA 111433 29 96.6 32 ............T................ GATGATCTGGTGGACCTCCCTCAGCGATGGCA 111372 29 96.6 32 ............T................ AATCCGTTTCGCGTCCACGAACTGCGCGGCGC 111311 29 96.6 32 ............T................ ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 111250 29 96.6 32 ............T................ GTTAAATTCCTTTCATTCATACCCCCCCCTTA 111189 29 96.6 32 ............T................ CCTTTTCGACGACACCCTTGCGACCATCCAGG 111128 29 96.6 32 ............T................ TTGAACTAGAGGTAGCAAATAGGTTTTATAAG 111067 29 100.0 32 ............................. CAGTACGACTGGACGGGATTTGATTCATTAAC 111006 29 100.0 32 ............................. GATGCCGTCGCCAACGGTGGGACGCTATATGT 110945 29 100.0 32 ............................. CGAATCCGACCTCTAAAATTATGCGTAGACCA 110884 29 100.0 32 ............................. ATTTTCGGGGCTTTGTTTTTTGGGCGATACCT 110823 29 100.0 32 ............................. ACGATTCAGGACGTGCTGATTTCTGGGCTGGT 110762 29 100.0 32 ............................. GAGTCATAGTATGAGCAGGACTGATTATTTAA 110701 29 100.0 32 ............................. GAGATGAGGCCATATCTGTACAAAGGGAGTTA 110640 29 100.0 32 ............................. AATGCTCTTTCCGTTGTGTGTTCCGCATAACA 110579 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 110518 29 96.6 32 .............T............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 110457 29 96.6 0 A............................ | A [110430] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGTATATCAGGACGTTTTTACCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGAGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132474-130737 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPK01000154.1 Salmonella enterica strain NGUA-38_S2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 132473 29 100.0 32 ............................. ATCCGAAAATCGTTGCGCCTGTAGCAAAAATG 132412 29 100.0 32 ............................. GTGAATCTTGAATCAGCCGCAATTGACGCCGG 132351 29 100.0 32 ............................. CCCGTAGCGCGCTGCGTCCGCTGGATATTGTC 132290 29 100.0 32 ............................. CCAGTAACCGTTGTATTCAGTCATTGGAGCAT 132229 29 100.0 32 ............................. ATTTCCCCCCGTCCTGTATTGTCTAATCCGAG 132168 29 100.0 32 ............................. TGATCTATGCGTCTTGAATTCACGTTAATTTT 132107 29 100.0 32 ............................. CCCATTTTGTTGCTAACAAAGTGGGTGTTTTG 132046 29 100.0 32 ............................. AGGTAGCAGGCGTACCCTCCAGCGGCGCTGGC 131985 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 131924 29 100.0 32 ............................. ATGTACGTAATCATTTTGGGCAGGCTGTTACG 131863 29 100.0 32 ............................. CCGTCGCCGAAGCCGTTGCCTAAATTATTCAG 131802 29 100.0 32 ............................. CGGCCTTTGCCCCTAGGAAACGATGATGACCA 131741 29 100.0 32 ............................. GCCGAAATCCCTTGGTTCGGATTCTCGATAGA 131680 29 100.0 32 ............................. ATCCACATTGGAACGTCAGGAACGGCGAGCTA 131619 29 100.0 32 ............................. CGGTAAGAATAGCGGAGGCGCGTAATCGTGAG 131558 29 100.0 32 ............................. TGCCGTCGCTACGCGCGTACTGTTTACGGATC 131497 29 100.0 32 ............................. GGCAGCGACGATATTCGCGAGGTGAACCTGAT 131436 29 100.0 32 ............................. ATCGCGCCCTCATCGCCCCAGATTTTTGATAC 131375 29 100.0 32 ............................. CTATAGCAGCACTCCGCCAGCTCGAGCAGCAG 131314 29 100.0 32 ............................. GGCGTGGGCCGGGCAATTATTAATGAAGTGCC 131253 29 100.0 33 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGGG 131191 29 100.0 32 ............................. AAACTGTTCGCACGACCACACCTGATATTAAA 131130 29 100.0 32 ............................. ATGAGCAGCGAAACGGGTAAAATGATTATGCA 131069 29 100.0 32 ............................. CGGCGTCTGCCGTTAACCGCATTTATCCGGAC 131008 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 130947 29 100.0 32 ............................. ACCTCACCACTCACGGATAGCAAAATTAGGGC 130886 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 130825 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACT 130764 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //