Array 1 6529-4731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNRV010000013.1 Chromobacterium vaccinii strain CR5 contig_0000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6528 29 100.0 32 ............................. CGGCTAGGCTGCGGGCCGCGCCAAGCCCTTGA 6467 29 100.0 32 ............................. GACAGGTTAAATAAATTATCTGCACGATCCAG 6406 29 96.6 32 ............................T GCAGATCGCCATTTAGGCCACCTGTTGAATAT 6345 29 100.0 32 ............................. CGCAGCGAGGAAATGTTCCAGGCCCTGGCCGA 6284 29 100.0 32 ............................. TAGAGCGCGCCGATGTGCAAGAGCGCACAGGC 6223 29 100.0 32 ............................. CACACGAGCGGCCGACGGTTTGATCGCCGCTA 6162 29 100.0 32 ............................. CAACAACCTTCGACTGTTCTAATAGTTCCAGG 6101 29 100.0 32 ............................. AACTGGCAATGCCGCGGCTTCCAGTTCGAGGT 6040 29 100.0 32 ............................. CTCCGCCTGGTCGCTGGCCAGGCGCTGGGCGC 5979 29 100.0 32 ............................. CTCACCGCGTATATCAAACACATCGAAATGCT 5918 29 100.0 32 ............................. CCGGTCACGGACGAACCAACATCGCCAGATAT 5857 29 100.0 32 ............................. CATGACGCCGGACGTAATCGACTGCGTGCGCC 5796 29 100.0 32 ............................. GATTTGTACGCCAGGCTCTTGGTTCTGCAGAA 5735 29 100.0 32 ............................. TTCGAAAAAATCAATCACGTCATCAAGGTAAT 5674 29 100.0 32 ............................. CACCACCTCGACCACCACGGTCAACAGCTGCA 5613 29 100.0 32 ............................. AGCGCCTAACGCAGCAGTTCATAAACGAGTTG 5552 29 100.0 32 ............................. GTACGGGGCTTGGCCAGCTCGTCGTAGACCGG 5491 29 100.0 32 ............................. CTTATGCCCAACGGCCAGCCGGAGCCGGCCGC 5430 29 100.0 32 ............................. CGACCTGCGGGAACACGATGAATTCCGGCCCC 5369 29 100.0 32 ............................. GCTTTCCCGATGATGTGAACTGGCCAGTGGCG 5308 29 100.0 32 ............................. CTCATGGGCTCGGGAATAGACCTTGCCGTTGA 5247 29 100.0 32 ............................. GCAAGCTGTCGGTCGGCCAGATCGACACCGAG 5186 29 100.0 32 ............................. CCCTACCAGCCCGGTTTCTACATGCTGTCCCC 5125 29 100.0 32 ............................. TCGACGGTGAACGCGCGGCCGAAAATCGATGC 5064 29 96.6 32 ...T......................... CTCGGCTCTCGCCTGTCGTTCTCGTACTGGCT 5003 29 89.7 32 ...T....T..G................. GCATCGATCCGTCTCAATCCACCACCTGGTCT 4942 29 89.7 32 ...T.......G.............G... GCTCAGGCGATCATGAGGGACGCTGAGCGCAC 4881 29 86.2 32 ...T.......G..T...A.......... GAGATGTCCTATCCCTGAATCGCCGATCTGAT 4820 29 93.1 32 ...T.......G................. CGCGGCACGGCCGCCGGCTACATCGCCAAGTA 4759 29 93.1 0 ...T.......G................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.2 32 CTGCTCCCCACATGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGATGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGTTGCTGGAAATCCGCGCCGGGGTCTACGTTGGAAACTACAACCGCAAGATCCGCGATTACCTATGGCAGCAGGTGGAGGAGGGGTTGGAAGATGGCAACGCGGTGATGGCTTGGCAAGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTTGGAGCCAATCGCCGCATGCCGGCTGAGTTCGACGGTGCGAAATTGGTGTCTTTTCTACCGCCTCCGGTTCCGGAAGAGACCCGTGAATAGCATGTGGATCGCTTTGCTTCAGGGGGCGATTTGGCTCTTTGAAAATCGGTAGATTTGTAGAGGGTGTTTTTGTTTTGCAAAATCAATTGCTTGCAATTGGT # Right flank : GATGCCGCTGTCAGCTACGCGCCGATTTCTACCTGTGAACCGCAGTCCCGCTTCAAAGACCGCATGCGCGCGCGCTCCACGCATGGAATGGTTTGTCATCCAATCTTTCCGCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAAGCTGAAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCGTTGTTTCCAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTCTGGCTGGGCAGCGGGGTGACTTTTTCCGCGCTGCTGATCTCTCCCCGCTGGCGCTGGCCGGCCATCCTCGCCGGCGTGTGGCTGGCGTCGATGATCTGGGGCATGGCGGCGCATGGCCTGAATCCGGTGGGCGCGGCGGCTTTCGCCAGCATCGAGGCGGTCAGCGGCGCCATCGGCTGCTGGGTGGCCGGCCTGGGCCGCAACGATCCGGACACCCCGGCCGGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17259-16749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNRV010000013.1 Chromobacterium vaccinii strain CR5 contig_0000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 17258 29 100.0 32 ............................. ATTCTATCAGGAAAAATTTATGCGACTGACAC 17197 29 100.0 32 ............................. ATGCATCAGTTTTAGGGTCGCAACCGGGGTTA 17136 29 100.0 32 ............................. GTGGCGCGAGACATCAGAGCGCGCACATTTTC 17075 29 100.0 32 ............................. AGGAGGAGGAACGCCCGGATTGGGCGCTGCGC 17014 29 100.0 32 ............................. TTTGGGCGGGTTTTCTGCTAAGTACTCTTGAA 16953 29 100.0 32 ............................. GAGGGCAGCGCTTTCGACCTGCTGCTGTCCGT 16892 29 100.0 83 ............................. GATGCGATAACGCTCAACGCAGTTCCTGCAGCGTGTTCCCCACGTGTACCGCCCAAGCCGCGCGCTTGTGCTGCCATCGCATC 16780 29 89.7 0 ...........A..C........C..... | TT,C [16753,16756] ========== ====== ====== ====== ============================= =================================================================================== ================== 8 29 98.7 39 GTGTTCCCCACGTGTGTGGGGATGAACCG # Left flank : TCTGCTGGCGCAATGGCTGTACAACGTGCCGCCACTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGTTTGCCGCAACTGCAATGCGCCGACCGAGCCTTCCGTCCGCTGCACGAGCGCTTGGCCACCCAGGCGCTGACCAGCTTCGAGTGGCTGAATGCCGAACATGCGCTGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTCACCGCCAACTTCGCCGCGGAGCCTGCCGTCTATGGCAAGCAAATCCTGCCGCCGCAAAGCCTGCTGGCCGAACTGGCCGGCCAGCCGCCCAGGCTGCTGCGGGTGGCCGATTGCGCGGGCAAGTGAATCGCCGGGATAATGCCGATGTCGTTTTGCTGGCCATGGCGCGGTAGTCTTCCATGGCTGGTAGGCGGCATTGCCGGTTGATTCAGCTGATTATTTTTTGATCGGGAAAATCGGTAGATTTTTAGAGTAAGTTTTTACCTTTAAAAATCAAAATGTTGAGATTGGT # Right flank : CTACATCAGTCGTTCAAGAGTTCAGGGATGCGTTCCAAACTGCCTGCAATGCCAATCGGCGGGTGATTCACATCCGATCGCCGGTTTCGTTCAAGTGGAAATGATGATGCTTTCCGCCCATGTAGAACGAAAGGATTGGCTATGCCCTGGATGACCGATTTGTTCCGTACCGCCAATGACGCCAGAGGTCCGTTTCCTGATCGCCCCTTGTCGCGCGTCACGCTGCCCGGGACGCACGACTCCGGCTGTTATGTGGACCGGGCGGTGAGCAACGCGCTTTCCAAAACCCAAAGCCAGGACATCTACGGCCAGCTGTTGGGCGGCATCCGGTATTTCGATATCCGGCCATGCGTCAAGGATGGGCGGTTGTTCACCTATCACGGCGAGTTTTATACCGGCGGGCCGATAGATGGCGAGGATGGCATCCTGATGCAGCTTCGCCGATTCATGCTGGAGCTGGAGACGGCCCATCGGGAACTGGTCATTCTGAACATTTCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 25027-24695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNRV010000013.1 Chromobacterium vaccinii strain CR5 contig_0000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25026 29 96.6 32 ..........................T.. GCGGTTGAATCTACCGGTAAGAGCCTGGCCAG 24965 27 93.1 32 .................--.......... CTGTTCTGAACTCCGGCGATGAGCTGACTCCA 24906 29 96.6 32 ............T................ GATACCGGCGCGCGTCAGGTGGGGCTGATCGC 24845 29 100.0 32 ............................. AACAAGGAAACGCCCCGGGACTACTACGCGGA 24784 29 96.6 32 .............A............... TCGGCGCGGCGGCCAGGGTGAGTTTTGCCATG 24723 29 75.9 0 .............AT.........CTTTT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.1 32 GTGTTCCCCACGCTCGTGGGGATGAACCG # Left flank : GTCCTTGATGCCGGCGAACACCGCCGAGATCGGGATGAACTCGGCGTCGAAGCTGGCGGCCAGGATGCGCGCCAGCGTGGTCTTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGTGGCTTGCCCGGGCCGATCAGATGCTGCTGGCCGATCACCTGATCGAGCGCCTGCGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGGATGGAGCGGAGAAACAGTATACCAGTTGGGGGCGGGCATGAAAAAAGCGCCAGCCAGGCGCTTTTGCTTGCATGCCAGCGGAATGGCGGTAGGCTGTAGCGTCTGACCAAGTTTAAGCCAGGCAGTTGCGAGACCTTGCGCCCAGGCTCTGAGGCTAGTGCGCGGCCCGTTTGGAGAGGGAGCATTTCCCAAGTGATTGGCGGAGCCGACGGCCTTGGTCCA # Right flank : GTGATTAGCAGTTGGCGCATAGTGGAACTTGGCTCATATCTACTTCTGCCTGCCAGATCACTCAAGCCCGAAAACAAAAAGCGCCCCGCGGGGCGCTTTTTTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCAACCAGGCGGGCCGGCTTCAGTACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGCTCTACGGAGATGGCCTTGCCATCGTAGAAGGTAACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGAGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCA # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCTCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //