Array 1 1287482-1286719 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFD01000002.1 Streptococcus dysgalactiae strain NCTC13762, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1287481 36 100.0 30 .................................... TGATATAAGAGTTCCTTCAGTATAGGGTTT 1287415 36 100.0 30 .................................... AGTGTTAAACCTAAAACAATTTGAAGATAT 1287349 36 100.0 31 .................................... TCACGCTGTTGACGTTCTTCTTCGGACAATT 1287282 36 100.0 30 .................................... TCTTGGATTCAAAGATGTCTAGAAGAAGCA 1287216 36 100.0 30 .................................... CTATTCAGATGAATTGAAGCGAAATGAAGA 1287150 36 100.0 30 .................................... AAAGCAATTAGCTCTTGATGATGCTGAAAA 1287084 36 100.0 30 .................................... CTGAAGCGATTTAGACTAAACGTGTCTAGT 1287018 36 100.0 30 .................................... GGTAATGGCGAAGATCGTAAAAAGGTACTC 1286952 36 100.0 30 .................................... TTATCCTTTGAGTTACACGGCTATTTTAAC 1286886 36 100.0 30 .................................... AATAACAAATAAGACTTTTGGACGAGGTCG 1286820 36 100.0 30 .................................... AATAACAAATAAGACTTTTGGACGAGGTCG 1286754 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.5 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTAAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1648123-1646694 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFD01000002.1 Streptococcus dysgalactiae strain NCTC13762, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1648122 32 100.0 35 ................................ ATCCATTTTTACCTCTCTAAATAATCATCTGGAAT 1648055 32 100.0 38 ................................ GTAATATTGTTGCGCGTCACGGTAACTAAAATACGAAA 1647985 32 100.0 34 ................................ AAATTGCAACCTAGCAAATTCTACTTTCTCGACC 1647919 32 100.0 34 ................................ AACAATGTAACCAAAACCTGCTAAATATGCTTCA 1647853 32 100.0 36 ................................ TAATATTCTTTTTACTTTTACATGTGTCCACGTATT 1647785 32 100.0 34 ................................ AAGTCATCACGTAAATTTTGCAATAATTCATCTG 1647719 32 100.0 33 ................................ AAAAATACGACAAGTAGCTATACATCCGTTAGC 1647654 32 100.0 34 ................................ ATCTCGCTCTAAAAAAGTTTTATAATATGCTTTT 1647588 32 100.0 34 ................................ GTTTAGCTTATGAGACTATTATAGACTAGTACGC 1647522 32 100.0 36 ................................ ATAATAAAAATCTGAAAGGTCTCTTGAATAAATAAC 1647454 32 100.0 34 ................................ AAAAGAACGCTTGTGCTTTTAAGAGAACGGTGGT 1647388 32 100.0 33 ................................ GTTTTAATATCTCCTTAATTTTTTAATTGTTAA 1647323 32 100.0 34 ................................ AAATGTTTTTGTGGGTAAATAATCATATAAACGC 1647257 32 100.0 34 ................................ TGAAAGTAAAGCTTACATATTTTTCGTTATTCAT 1647191 32 100.0 34 ................................ ATTTTAATATCTCCTTAATTTTTAATTGTTAAAA 1647125 32 100.0 35 ................................ TACGTTTACAGTCATGTAAACCCCTTTCTTTAAAA 1647058 32 100.0 33 ................................ GTTTTACCACTACCTCTACCTATCACACAATTA 1646993 32 100.0 34 ................................ CTTTTATCTGTAAAATCGACGAAGAGCACGAAGT 1646927 32 100.0 36 ................................ TTTATAAACCTGCCTTTCTGTTAATTCTTTATCTCT 1646859 32 100.0 36 ................................ ATTGTAATCCACTGCCTGCTCTCAACTGATTACTTG 1646791 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 1646725 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ====================================== ================== 22 32 99.6 35 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : CAAAGGGATCTATCGCTTAGATTTACCGACAGGAGCTGGCAAGACTAATCTTAGTATGCGCTATGCGTTTCACCAATTAGTTCATCAAGACAAATCAAGTTTTTTTTACATAACGCCCTTTCTTTCGGTCCTTGAGCAAAATGCTTCCGAAATTAGAAAAGTTACAGGTGACCTTGGCGTCCTAGAACACCATTCCAATGTGGTGAAACAGGCTAATGAAGATGATGATGACAAGGACAGTTTATTGTCAGCTTATCTTAGTGATAGCTGGGACAGTCAAGTAGTCTTGACTTCTATGGTTCAATTTTTCCAAACACTTTTCAAAACAAAATCAGCTAATCTGAGACGTTTTTCAAGTTTGATTAATAGTGTTGTGATTCTAGATGAAGTTCAATCCCTGCCTATTGAAGTCACCACTTTGTTTAATTTAACGATGAATTTTTTAAATAAAGTTGTGGATTGAAATCTTTTTTACATAATAAAAAGCCACCACAATGTGA # Right flank : CTTGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAACGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //