Array 1 431-664 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAKF01000139.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22960, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 431 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 497 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 563 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 629 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : AATTTAGGGGCTTAGGAAGCAAAAATATTAAATTGGGTTATTTCGAAGCATCTTCATTAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 25796-24638 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAKF01000023.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22960, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25795 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 25729 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 25663 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 25597 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 25531 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 25465 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 25399 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 25333 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 25267 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25201 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25135 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 25069 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 25003 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 24937 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 24871 36 100.0 30 .................................... GCTTATCGGCGTGTACGGCTGGGAGCGCGA 24805 36 100.0 30 .................................... AATTTTTATTGAAGATGTTATTCATTTTAG 24739 36 100.0 30 .................................... CATAGCCTTTTTCAAGGTAGGGCATGACTG 24673 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : TAGTTTCATATTAGGAGCTTATCAGGTTTTTTGATGATTTTGCTTCCTAAGCCCCTAATTTAATACGGCGACCATCTCGTGCCAA # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //