Array 1 14800-13613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADODF010000007.1 Klebsiella quasivariicola strain Kpn16 NODE_7_length_237071_cov_26.971782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14799 28 100.0 33 ............................ CCAAACCTTGGGCACTTGTTACCTGCCGTTTTA 14738 28 100.0 33 ............................ CGGGTGAACTCCCCCCGCAGGTGGAGGTGTTTG 14677 28 100.0 33 ............................ TTTGCTGGTCCGCAGCGCGGTCGCGGTTGGGGG 14616 28 100.0 33 ............................ CTTTTGATCTTCGCACCATTTTTCAACGGCTTT 14555 28 100.0 33 ............................ TAACCCCGGTTTGATCCAGTTTTTCAACCAGCC 14494 28 100.0 33 ............................ CAGACCTCTTCGTCCACCTCGACCGCCCTACAG 14433 28 100.0 33 ............................ TATCGCCCGGGCTCGCAGGCGCAGGACTATATC 14372 28 100.0 33 ............................ TACCAGTTACAGAAAGGGGATTGCCTCGAAGTT 14311 28 100.0 33 ............................ TATATTGGCTATATCCCGATTTATACAGGCATG 14250 28 100.0 33 ............................ TCTGAGCTGGTGGCCATTAATGCTGGAGCTGTA 14189 28 100.0 33 ............................ TAGATAACGACCCGGACGACTTCCGGCGGCGGC 14128 28 100.0 33 ............................ CAGATCCCACCAGATTTCCCGCAGCTCACTAAG 14067 28 100.0 33 ............................ TGTGGATTCATATGCTTTAGCAGGATATGCGCA 14006 28 100.0 33 ............................ CATCAGCAGAGAACCCGAGCGTAGACAGGCATT 13945 28 100.0 33 ............................ TATTGTTCGCGGCAAGTGTCATACGACCTGGTA 13884 28 100.0 33 ............................ TCATCCTTAACGGGTCGATGATTGAGCCTGTGA 13823 28 100.0 33 ............................ CCAGCCATCGGCAAAGCATATCGCGCGACCGTG 13762 28 96.4 33 ..T......................... CTCGCGCGCCGCTGCGGGCTGATCACGGCCAGC 13701 28 100.0 33 ............................ CAAAGAGGGGATCTGTTACGAGCTGCGCGACTA 13640 28 71.4 0 ........T.....T......C.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.4 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TATATAAAGAACGACTCTGTATCGATCTGGCTTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTTATTGCCGCCGATATCAATGAGCTAATGGGAGGAAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCAGGCGTCAAAGATTCGGTTGCACAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCGGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAATTCTCGCTCTTTCACAATATGTTGGT # Right flank : ATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATGATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAGTATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACCGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGGCTTTACCAGTCACATGATTTAATACGCCAGTTAAAACCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGTGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTCTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24038-23462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADODF010000007.1 Klebsiella quasivariicola strain Kpn16 NODE_7_length_237071_cov_26.971782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 24037 28 100.0 33 ............................ TGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 23976 28 100.0 33 ............................ CCAGTCGCCAGGAACAAACTGTTCAACGGTTAC 23915 28 100.0 34 ............................ TTATTATCTGCCGGTCGAATCCTCATATTTAGAG 23853 28 100.0 33 ............................ TACATCTGGCGCGAGAATAAGAAAGGCAACCCC 23792 28 100.0 33 ............................ TTGCTCTTGCCACAGCCGCGCCACGTTTATTTT 23731 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 23670 28 100.0 33 ............................ TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 23609 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 23548 27 92.9 33 .............A.......-...... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 23488 27 82.1 0 ............C.T......C-.A... | ========== ====== ====== ====== ============================ ================================== ================== 10 28 97.1 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGAGATTGCCCGGGCGCTTATAGCGCTGTATCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //