Array 1 179120-180612 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABB01000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_0764_R1 NODE_1_length_360331_cov_0.879361_ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179120 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179181 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179242 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179303 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179364 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179425 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179486 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179547 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179608 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179669 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179730 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179791 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179852 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179913 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179974 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180035 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180097 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180158 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 180219 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 180280 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 180341 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 180402 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180463 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 180524 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 180585 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196745-198526 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABB01000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_0764_R1 NODE_1_length_360331_cov_0.879361_ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196745 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 196806 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 196867 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 196928 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 196989 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 197050 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 197112 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 197173 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 197234 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 197295 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 197356 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 197417 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 197478 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 197539 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 197600 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 197661 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 197722 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 197783 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 197844 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 197906 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 197967 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [198009] 198009 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 198070 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 198131 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 198192 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 198253 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 198314 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 198375 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 198436 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 198497 29 96.6 0 A............................ | A [198523] ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //