Array 1 311660-317987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAIP010000002.1 Shewanella sp. DNRA4 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 311660 28 100.0 32 ............................ CTGAACGTTATGGCAAGATTTATGTCCCTGAA 311720 28 100.0 32 ............................ TTCACAGCATCCTTCATGTAGTTATCTATAAG 311780 28 100.0 32 ............................ AATGAGATACTTATCGAACCGTCTGGTGATCT 311840 28 100.0 32 ............................ GATAAAAATTAGTGAAGGGGGTGGTCGAGCTT 311900 28 100.0 32 ............................ ATTGCGGCACGCTCATGCGCGCATTGGCTAAG 311960 28 100.0 32 ............................ TAAACCCGTCCTGCCAGACGCTTTTTATTACT 312020 28 100.0 32 ............................ TGACAAACAGGATTGGAGGGATCGCCAGTAGC 312080 28 100.0 32 ............................ ACCCGTGTAATTCGGGTGAGAAAGGGCACAAC 312140 28 100.0 32 ............................ CAAATAGGGGCGGCGCTGGGGGCTAAGGGCGC 312200 28 100.0 32 ............................ CATACGAGCGGGCCGTGTGGCTCGAGGACCAG 312260 28 100.0 32 ............................ AGTCAACGGTCCGCCCTTCGATGGACTTTGAA 312320 28 100.0 32 ............................ ATGGCTAGCGCGCAGGCTTAAGCAGTAGTCGT 312380 28 100.0 32 ............................ GTTAATGTCGTTTAACAATAACTTGACCATCG 312440 28 100.0 32 ............................ TCTAAATAATAACACGAATTTGGTTTATTTAA 312500 28 100.0 32 ............................ TTTGCGAGCAGGATCAGGGCGTTGATTTTGTG 312560 28 100.0 32 ............................ GTAAACAGCACGACTACCCAAAGCTTTACACC 312620 28 100.0 32 ............................ TAGGCCGAGTACCGCGCCAGTGGCGACGCGCA 312680 28 100.0 32 ............................ ATGACATACGCCTTAAATTGAATCGTCTACAT 312740 28 100.0 32 ............................ GCCTGAGCAAACCAATCAGGATTACCAACAGG 312800 28 100.0 32 ............................ GAATGGTCAGCAAATGGACGCAAGCGCAAGGA 312860 28 100.0 32 ............................ TTTAATCGATTCAACACCGCGATATGGCGAGC 312920 28 100.0 32 ............................ ATGAATGGGAAGGTGAAGGCGGTTGCGAAGAT 312980 28 100.0 32 ............................ TAGCCGAGCACTAGGCCGAGGAGGTTTAATGA 313040 28 100.0 32 ............................ TAGCCGAGCACTAGGCCGAGGAGGTTTAATGA 313100 28 100.0 32 ............................ TATCCTGCGCTATCGGCCGTCGGGGTGGCTGA 313160 28 100.0 32 ............................ TGATGCATTCCCAAATTATACGTTTGAGCGTG 313220 28 100.0 32 ............................ TTGGCGCTGGCGCCAGTATGCCAAGGTGTAAA 313280 28 100.0 32 ............................ GGTAAGTAAGTTTTGATAGCGATAAGGCATTC 313340 28 100.0 32 ............................ TCTGATTCTTCGCCAGTCATAGAAAAATGGGT 313400 28 100.0 32 ............................ TACAAGCCAAACCTGTTCTACACTAAACAGGC 313460 28 100.0 32 ............................ TGACAGCTTAACAGTAATATCACCAGCTACAG 313520 28 100.0 32 ............................ AGCATCAGTCATCAAATCAAGCTCATCATCTA 313580 28 100.0 32 ............................ TGTACGGAAGATAATCTTGCTTCTTGGCTTCT 313640 28 100.0 32 ............................ GTTGCCATGGCTTTAATGGCTTCTTTAACTGC 313700 28 100.0 32 ............................ TAGAGGGAAATTGTTATGAAAAAATCGTTAAA 313760 28 100.0 32 ............................ TAGAGGGAAATTGTTATGAAAAAATCGTTAAA 313820 28 100.0 32 ............................ TGTACGGAAGATAATCTTGCTTCTTGGCTTCT 313880 28 100.0 32 ............................ GTTGCCATGGCTTTAATGGCTTCTTTAACTGC 313940 28 100.0 32 ............................ TAGAGGGAAATTGTTATGAAAAAATCGTTAAA 314000 28 100.0 32 ............................ AGTGGCAATATTGGCGCCACAAATCCCATAAA 314060 28 100.0 32 ............................ ATAAACTAACCGTAGAGTAATTATCATGCCAG 314120 28 100.0 32 ............................ AGGTACGCCTCTGTCGCGCTGTTCGCGTTGGC 314180 28 100.0 32 ............................ AGTTAGCGTAACTGCCCCGACCGTGACTGGTT 314240 28 100.0 32 ............................ TTGCACAAGGTTGCGACCCTTTAGCGCTTTGC 314300 28 100.0 32 ............................ AGTGAGAGGGCGGATTGAACGATACTTACTCA 314360 28 100.0 32 ............................ AGGCATCCGTTCACTGAACAATGTGATCACTG 314420 28 100.0 32 ............................ TGGCGATAGTTGAGACTTGCCCGACTCCACAT 314480 28 100.0 32 ............................ TACTCGTAAAAAATCAGAAGTGTCTTGGATTG 314540 28 100.0 32 ............................ ATCACGTTTAACACCTGTCAGCCTTCCGGCTA 314600 28 100.0 32 ............................ TCATGAAGTATTGGCAAAATATCCTAAGTACC 314660 28 100.0 32 ............................ TTTGATTTTTTAACTAGCCCTGCTGAGTAGAA 314720 28 100.0 32 ............................ ACCAATAACAATATGTGCAACTTCAACATTAA 314780 28 100.0 32 ............................ AAAAGCGTATCGCTACGCTCCCATCAAGGGGA 314840 28 100.0 32 ............................ CTACCCATCCCTCGAACTTATCGTAAAGCTCA 314900 28 100.0 32 ............................ ACGTATTTTTTGTGATGCCGATTGCCGTGATG 314960 28 100.0 32 ............................ CATGGAAAAATGATAATGGTGAAGGTCGTTGT 315020 28 100.0 32 ............................ AAGCTGGCACGTTGACGCCAACAGATAAGCAC 315080 28 100.0 32 ............................ AGTGAGCGAGATTGAGGAATTTTGCGATGTTA 315140 28 100.0 32 ............................ AAGGTCTGCGAGTTGCTCTCCATTTACTGAAT 315200 28 100.0 32 ............................ ACCAGAATCAGCAGCAAACGCACTAAATGACG 315260 28 100.0 32 ............................ TTGTTGTAATGCCACACCATGATTAGGTCTAG 315320 28 100.0 32 ............................ AATCCTGCCGACGGTGATTACCCATATGGATC 315380 28 100.0 32 ............................ CGACGGAACCGTGAACATTAACGGCGCTATCA 315440 28 100.0 32 ............................ AGCATACGCGACACCATGATCAATAGCATTGC 315500 28 100.0 32 ............................ GAGACAATCGATAATATTTTTACAGGCACTAT 315560 28 100.0 32 ............................ AACCAGCACGTGTCATGGTTAGTTGTGAAGTG 315620 28 100.0 32 ............................ GAGTACAGACGCTATGCCAATAATCCGACACT 315680 28 100.0 32 ............................ CAGCTGGCGGAGATAACACCGTGGTCAGGTTT 315740 28 100.0 32 ............................ TGAAAGGTAATGCCGCGATTACTGAGCTAAAC 315800 28 100.0 32 ............................ AAGGTGCGAGAGAGCGTGAAAAGGGTGGGCGA 315860 28 100.0 32 ............................ GCAAGGCCGTAGGTGGTCATTGCCATTTTGCC 315920 28 100.0 32 ............................ GCAAGGCCGTAGGTGGTCATTGCCATTTTGCC 315980 28 100.0 32 ............................ TTCTCTGGCGGCAATTTCGGCAACTTTGTTAA 316040 28 100.0 32 ............................ AAGCTCGATGAAATCCTGCATCAAATTCAGGA 316100 28 100.0 32 ............................ ACACTAACCGCAGTGCTTACCTGCTTTGTTAT 316160 28 100.0 32 ............................ TTTATCTGTCGGAAACACCAGCTCGCTAGAGC 316220 28 100.0 32 ............................ GGGAAGGTAAGGGAAAGTTCAAGTTTGAGCAT 316280 28 100.0 32 ............................ ACCTAAGGATTTAATAGATGCATTAATTTGCG 316340 28 100.0 32 ............................ TCAACATAACGTTCTCACATTGTGCGCATCCT 316400 28 100.0 32 ............................ TTTTTAACCAGGTCTTTTGCTTGGTCCTTGGA 316460 28 100.0 32 ............................ CCAACCAGCTAACAATCTCTTTACGTACTAGC 316520 28 100.0 32 ............................ ATTTGCAGCCTTCTAAGCTCATCAGGCTTAAT 316580 28 100.0 32 ............................ GAGTGGAACTGTCACGGTCAACGCAACGTGTA 316640 28 100.0 32 ............................ ATACAACACCTTCGGTGATGACAGTCATATCG 316700 28 100.0 32 ............................ GTACCCATACGGCTACGCGCTAAGCGGCGACC 316760 28 100.0 32 ............................ TAACGCGTTAGCGCTCGCTTCGGCTCGTTACG 316820 28 100.0 32 ............................ AATCGTGGGCCTCCACTGTTCACCACCGTTCC 316880 28 100.0 32 ............................ AAGCGTTGCACCTGTACCAACAACACCCGAGA 316940 28 100.0 32 ............................ GAGCATGCTAATTAAAACTAAACGCGGCGCTC 317000 28 100.0 32 ............................ AACTGTGGCAACTTTAAGCGTCGTGGTGTGTT 317060 28 100.0 32 ............................ AGACGGGCTGACCGTGGGTGGCTGGCTGGACT 317120 28 100.0 32 ............................ GAGTAAAGGAAGCGCACGCAGAACTGTTAAGG 317180 28 100.0 32 ............................ TTAACACCGCGGCGTTGCGCGCGCGGGTGGTG 317240 28 100.0 32 ............................ AATGATTGCTGTTGCAGCACCTGTTCCAGCAC 317300 28 100.0 32 ............................ TATCTAGCCAGATGATTAACGATTTGCGCTTC 317360 28 96.4 32 .............A.............. AAACTGCTGTTCAAGAGTTCGCTCAGTTTCTG 317420 28 100.0 32 ............................ GAGCCAACCCAAGGCGACAAGCTGGCAATTGT 317480 28 100.0 32 ............................ ATAGAAACATCGCGGTCATCAAAGGTGAAATC 317540 28 100.0 32 ............................ AACGATAAGCCACTGTGCGAGTTGAGTGATGA 317600 28 100.0 32 ............................ AATATGCTTAGATAATCCTTATCTCTCCTGCG 317660 28 100.0 32 ............................ ATAGCCCCAAATGTCTCCGTTATCTGGGTTGC 317720 28 100.0 32 ............................ TTGATACGCACATCATAAGAAAACTAAGAAGT 317780 28 96.4 32 ..........G................. ATTAACGGTAACCGCTGGCAGTGATGTAGTGG 317840 28 96.4 32 ..........G................. AACTTAGGCAGACGATGACGCTATGGTTGCCC 317900 28 96.4 32 ..........G................. TGTGCGCCAAAATATCAATATGGAGTCGCAAA 317960 28 96.4 0 ..........G................. | ========== ====== ====== ====== ============================ ================================ ================== 106 28 99.8 32 GTTCACTGCCTTACAGGCAGCTTAGAAA # Left flank : ATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAATAGCAAGTTTCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGGGCTTCGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAGTATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGTAAGTTTTAACCCTTTATTTTTTGCTCTTTAAAAATATATTTTAAATACAACAAGTTACAATGGGTGGTTTTTAATAAGGTAAAAAAGTAATTTTTATCCTAACTGCCTGTTGTAACTTATTTTTATTGATTTAGTCTATT # Right flank : ATCAATAGCAGCACAAATTTGATTTGTTCTTCGTTGATGTAGCCTAATAACATTAAGCCTTTTGGGTGAGGGCTTTTTATACGTCTACATATATTGATTCAACGTTTTTTTGATGCAAGTCAGTGTTAGCTGATTGGGCTGATTTAAACAAGGATGGCTGAGATGAAATTAGGTGTACCTTTCGGGCAGGATAAAACCACTGGCGAGTGGAAAGATGTTGCAGGGGTCGAGCGGGGGCTTGCCTGTGGTTGTATTTGCCCTTCTTGTCTTTTGCCTTTGTCCGCCCATCAGGGAGATGAGCGAGAATGGCACTTTACTCACCACACCAGAAATACACCTAAAGTAGAAATAGTTGATTGCGAGTTTTCTTTTGAAGTTTTCGTGAGGATGATGATCCATCAATTGCTGCGGGAAGGCGCATCACTCAAGTTACCTGCATATTTTAAGCCTGTTAGTGTACCAAAGGTTTTACGAGAACAATTTCCTCCCGAAGTGATGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCTTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCTTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //