Array 1 454212-455521 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU943321.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AB-243 isolate 2016-340284-001-01 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454212 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454273 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454334 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454395 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454456 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454517 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454578 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454639 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454700 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454761 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454822 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454883 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454944 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455006 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455067 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455128 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455189 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455250 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455311 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455372 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455433 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455494 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471653-473617 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU943321.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AB-243 isolate 2016-340284-001-01 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471653 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471714 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471775 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471836 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471897 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471958 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472019 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472081 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472142 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472203 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472264 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472325 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472386 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472447 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472508 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472569 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472630 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472691 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472752 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472813 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472874 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472936 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473039 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473100 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473161 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473222 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473283 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473344 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473405 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473466 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473527 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473588 29 96.6 0 A............................ | A [473614] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //