Array 1 41408-42995 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTV01000034.1 Pseudomonas aeruginosa strain AZPAE14867 AZPAE14867_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41408 28 100.0 32 ............................ AGGAAGAACGCGAAGCCGCCGCTCGCCGCGAA 41468 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 41528 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 41588 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 41648 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 41708 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 41768 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 41828 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 41888 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 41948 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 42008 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 42068 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 42128 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 42188 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 42248 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 42308 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 42368 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 42428 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 42488 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 42548 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 42608 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 42668 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 42728 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 42788 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 42848 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 42908 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 42968 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52869-51520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTV01000034.1 Pseudomonas aeruginosa strain AZPAE14867 AZPAE14867_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52868 28 100.0 32 ............................ GGCGAGCCTGGTCGTCGTGGCGGAGTGATGGT 52808 28 100.0 32 ............................ TTGTTGGATGACTGCAACTTGTGACATATTCG 52748 28 100.0 33 ............................ TATTACGACATCCAGTGGCGAGACATGGCCATC 52687 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 52627 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 52567 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 52507 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 52447 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 52387 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 52327 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 52267 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 52207 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 52147 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 52087 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 52027 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 51967 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 51907 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 51847 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 51787 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 51727 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 51667 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 51607 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 51547 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //