Array 1 89373-89153 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQMS01000126.1 Escherichia coli strain EETUKB162 NODE_1229_length_89342_cov_54.593361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 89372 29 100.0 40 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCANNNNNNNNNN 89303 29 100.0 32 ............................. GTCATCACGATGAATCAAAATTTCGCCCGGCT 89242 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 89181 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ======================================== ================== 4 29 99.2 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17923-16899 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQMS01000130.1 Escherichia coli strain EETUKB162 NODE_1368_length_106304_cov_59.095520, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 17922 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 17861 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 17800 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 17739 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC 17678 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 17617 29 100.0 38 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGNNNNNNNNN 17550 29 96.6 32 N............................ CAAAAAAATAATATCCGGCAGTCTGTACGGTA 17489 29 100.0 42 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGNNNNNNNNNN 17418 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 17357 29 100.0 35 ............................. AATAGCAATAGTCCATAGATTTGCGAAAANNNNNN 17293 29 86.2 32 NNNN......................... GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 17232 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 17171 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 17110 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 17049 29 96.6 32 ..........T.................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 16988 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 16927 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ========================================== ================== 17 29 98.2 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGNNNNNNNNNN # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //