Array 1 376534-375244 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CFLB01000001.1 Streptococcus agalactiae strain BG-NI-004, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    376533	    36	 100.0	    30	....................................	TAACTATGGTAATCCATCTAGTATACATAC	
    376467	    36	 100.0	    30	....................................	TATTATTGATACAGTTATGACTTTCACACA	
    376401	    36	 100.0	    30	....................................	AGAGCGATAAGCCTTCCTCAAACAATACAT	
    376335	    36	 100.0	    30	....................................	AATTCCAGTTGGAATATGCGTCAAACGAAC	
    376269	    36	 100.0	    30	....................................	CGTTGTCTCATTATTTGATAAATATTTATC	
    376203	    36	 100.0	    30	....................................	TTCCCTTGCTAATATTAACTTAGGAGCAGC	
    376137	    36	 100.0	    30	....................................	AAATACAAAAGGTGTTACTGTTTACAACGA	
    376071	    36	 100.0	    30	....................................	GAAGTATACTACGGTTAGAGATTGGCTCAA	
    376005	    36	 100.0	    30	....................................	ATTAGTCCTGTTGTTATGATGGATGATTAT	
    375939	    36	 100.0	    30	....................................	ACAAACCTCTAATGGATAATATAGAACAAA	
    375873	    36	 100.0	    30	....................................	ACACAATTAAACATAAAGAAGTGCTTATTT	
    375807	    36	 100.0	    30	....................................	TCAGGAGATTGTGTGTACTCACGAATTTTT	
    375741	    36	 100.0	    30	....................................	AAATTGTTTTTGTTGTAATATAAAGTCGAC	
    375675	    36	 100.0	    30	....................................	CTACTGTATTATCTGAAATAGTATCGTTTT	
    375609	    36	 100.0	    30	....................................	TCTCGGGAAATGCAACTGATGCTGCAATCA	
    375543	    36	 100.0	    30	....................................	AAATTGTTTTTGTTGTAATATAAAGTCGAC	
    375477	    36	 100.0	    30	....................................	GCTAGCATGGCACAAAAATAGCGTTGGAAT	
    375411	    36	 100.0	    30	....................................	TTAATAACTGTCCGTTTTGCCATTTCTTGC	
    375345	    36	 100.0	    30	....................................	AGAGGGGAAAATATCAATGCCGAATGCTGA	
    375279	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        20	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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