Array 1 299298-300363 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022130.1 Lactiplantibacillus pentosus strain SLC13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 299298 29 96.6 32 ............................C ATTCGAAGTGGCTGCAGGGCAATCTAAACTCA 299359 29 100.0 32 ............................. ATAACTTTTTAACTACTAGCGGTTATCAGAGT 299420 29 100.0 32 ............................. GTAATCGTCAGCTTTATCTTGACTAATGTCGA 299481 29 100.0 32 ............................. TATCAAGAAATCCACTAATTACTTGCATTGGG 299542 29 100.0 32 ............................. CAGCCAATCAGACATTAACAACATTATCAAAG 299603 29 100.0 32 ............................. CAATTTCAGAAAACGAATCTTCATCTGAAATG 299664 29 100.0 32 ............................. AATCAGCGAATTCAGATAATTCCCTATCACTG 299725 29 100.0 32 ............................. TTCCGAATCCTTTTTATCGGCAATTAATACGC 299786 29 100.0 32 ............................. AACGGTGTGAAATTCGTTAAAGATACACCATA 299847 29 100.0 32 ............................. ATCTGATCCCTCGAACAATGTATCGATGTCAC 299908 29 100.0 32 ............................. GATAACTGGGACATGCCATCAAATACAACTTT 299969 29 100.0 32 ............................. AACGATCTAGATGCAGCCGTTGCTGATCGTTT 300030 29 100.0 32 ............................. ACTTCCGGCGCTGACATTGCCGGCGGGTAGGC 300091 29 96.6 32 ............................A AAGGTGCTTCGCTAAGTCAAGCAGTTGTCTTG 300152 29 96.6 32 ............................C GAAGAGATTCGAAAGCAAAATGCGGCTCAGGC 300213 29 96.6 32 ............................C TATTCCTTGGGCGATTTTATCCGTGGAATTTA 300274 29 96.6 32 ...............A............. ATATGCATGTATGTGCCGAACAGTTTTGCAAA 300335 28 82.8 0 ............C..A......A.-..T. | C [300357] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.1 32 CTATTCCCCGTGTATGCGGGGGTGATCCT # Left flank : ATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATGGATTTTTTAAAATTCCGGATATAGGTCAAACATTCACGCCTATTAAACGTCGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTAATGTAAATCTCAGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAGTCAGCATTGCTATCGCCTCTAATATATACTGGGATATTTCAGCATTCATACAGAGCAATGGACGACATCACTTCATCAATAGAACTATTTAACTTCTATGAGAACCAATGGCAAAAAATTTAAGTTCACACCACCAATCTTCCTTATGAATCAAGCTTCCATTACACAAACAGTGCATTTCTCAGATGTGTTCTAAATTTTTAGCCTTTCTACCTTACATAACGCTTGAGCTAACGCTAACGTCGCTCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGCTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCTTGCTTTAAGAAGGCCTCATCAAAATGAAAGTTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 302981-304899 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022130.1 Lactiplantibacillus pentosus strain SLC13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 302981 28 100.0 33 ............................ TGCTTGTGCAACTAACCGATGCACCAATTTATT 303042 28 100.0 33 ............................ CAACGTAGCCCGCCTGCGCTAATGCCACCCTGA 303103 28 100.0 33 ............................ CACCGGTGATTAGATTATCTATCTGTGATTTAG 303164 28 100.0 33 ............................ CTAATGCATCTTATGCCGCACAATCAAAAGGGA 303225 28 100.0 33 ............................ TATCCGACCAGACACCTTTATACGTCTCTGATT 303286 28 100.0 33 ............................ TTGGTAAGCCACAAAGGAATGCTGGTTCGAATC 303347 28 100.0 33 ............................ TTTCCATTGATAATGTCTGTAATCGTGCTCGTG 303408 28 100.0 33 ............................ TGAAATGGGTGCAGTTAAAGCTGGGTCGTTAAA 303469 28 100.0 33 ............................ TACAATTATCACCTACGGAATCCCAAAAGATCA 303530 28 100.0 33 ............................ TTAATCCCATTGTAATTCATTTGGCCGTCTTGA 303591 28 100.0 33 ............................ TAATATACCACAGCTACAGGTTAGTTTCAACCA 303652 28 100.0 33 ............................ TAAGATTGGTGACGAGGGCAAGGAATCTTCAAG 303713 28 100.0 33 ............................ CAAGTCAAATGCCACGATTGGAGATATGCAACA 303774 28 100.0 33 ............................ CGCTATTATTGATTTAGCTAACGTAACCACTTC 303835 28 100.0 33 ............................ TAATTGCTTGCTTATCCGGTAAATAACGCATAC 303896 28 100.0 33 ............................ TCAGCGCTACTAATTCTGCTATGAAATCAACAT 303957 28 100.0 33 ............................ CCAGATTGGCAACATCAGCAATTCAAAATCTTT 304018 28 100.0 33 ............................ CATATCAGTAATCCCATAGTTGTTCCGCTTATA 304079 28 100.0 33 ............................ CCATGTGCTTCTTCTTTAGTTTCTTTAGCGACA 304140 28 100.0 33 ............................ TAACCAACTGAGGTCGCGTAATTGGTCGCGCGA 304201 28 100.0 32 ............................ AGCTGTAGCAGCTTCTGAGATACCACCAGTTG 304261 28 100.0 33 ............................ CTGATTTCAGCAGCAGGATAAATAGAAGTAGCC 304322 28 100.0 33 ............................ TCAGATGTGATTAAATCTGTCGTTGAAATCTAT 304383 28 100.0 33 ............................ CGCAAATCTTTCAACGGTTCGCGGCTTGTTCGA 304444 28 100.0 33 ............................ TACTACATTTCGTTCTTTGACAATGTTTTTGAA 304505 28 100.0 33 ............................ TTGACAATCTATCGTGCACAAATCCTAACTCAG 304566 28 100.0 33 ............................ CAGTTTGACGTGACCGGTAAGCGTATCGGGTAC 304627 28 100.0 33 ............................ CGATGCTGACACATTTTTTAGGGCTAACTTCGG 304688 28 100.0 34 ............................ CGGTACCCATGAAATCAGTGGTACAAGCTACATG 304750 28 100.0 33 ............................ CGTTGTGTTCGCATGAGCCGTGTTACGTTTGAA 304811 28 96.4 33 .................A.......... TACTGGCATATTCCTGGTAGTTTACCTATCAAT 304872 28 78.6 0 ..A.......T....A..A.......TT | ========== ====== ====== ====== ============================ ================================== ================== 32 28 99.2 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTGGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAGGCTTCACAATTATTAAGCGCTTACAATTCATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGACATCATCGACTTTCATCCGTACATTTTCGTCAGAACCCTAAACTGCTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTAACTTTATACTTCTAATATTAGCATTCAATGTTTGAATAAACATCTATTTTTGGAAGGACTTCGATGGATTTTTGATAAATTATGACGACTAGTTTGTATCAAGTCAGTCTGATATGTCCAGTTTTGAAGTTTCCCCATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGAGACTTAGCCAATTTTGAATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TCTTCCATGAAAAACACTAGTCCACTATGGTTGGTTGTTTCCCGTGTATACGGGAGACGGAAGTGCTTCACTTGGTTAACTAACAGGATTGCCACTGCTTTGCCATTTACAACATCCATGAAGATGACACTCGAATGGCAGATCATTACGATTTGAATGAATTGTTTATACGTCGTATTTTAGAAGGAGAACTACTCTTCCACAAGAACCAGTCTTATTTTGAGATTGACAATTCAAGCCTCGACAATCTTGTCAAAACATTGTTTCATCCGCCGTATCATTAATTTTAGAAAAGGGGTACTCTTATGCCTGATACCAACACCATACTTGCGCATACGATTATCGAACTGATATTGTATTTTGCTTTCATGTTTTTTGTTATTCGCTTCTTCGTCCGACGCCACCGCGCTAAGCATCCTAAGCGTCCTAAAGTCTCGCCATCACCGGAACAAAAAGCAGCGGCCAAAGCAGAACGGCAAGCACAAGCTAAAATTAGCAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 547578-548888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022130.1 Lactiplantibacillus pentosus strain SLC13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 547578 28 100.0 33 ............................ TTGATGATGATTATCAGTGATAAAGCCAACGTT 547639 28 100.0 33 ............................ TAGGCGGGAATGCGTCTTTGATGTCTTTGACGC 547700 28 100.0 33 ............................ TTAATGGCGATGTGAAGGTTAGCGAGGTATGAA 547761 28 100.0 33 ............................ CTATTAATGCACATCGTTTTGGATATGGCAGTG 547822 28 100.0 33 ............................ TATCATCTTTGGTCAAATAATTTGCATCAGGGC 547883 28 100.0 33 ............................ TAAATCCTGTGACTTTAAAGAATAAGCTTGATC 547944 28 100.0 33 ............................ CACTGAATGCAGTGGCGTTGTTAGATACACCAT 548005 28 100.0 33 ............................ TGAGGTATAATGATCGAGTAACGTTGGTTTATT 548066 28 100.0 33 ............................ TCTTGCTAAATGGATCTTCAGGATCACCAAGCA 548127 28 100.0 33 ............................ CTAAGCAGTATGACGCGGCTGGCTGGTCAACGT 548188 28 100.0 33 ............................ CGATTAACGTATTTTTTAGTGTTCATTCTTTTT 548249 28 100.0 33 ............................ CACATACGTTTATGATAAGGATAAAGAAGGCAA 548310 28 100.0 33 ............................ CAACTGCAACAGGGTGTGAAGAACAGTATGAGA 548371 28 100.0 33 ............................ TATTGTTCTCTGGTACATAATAATAATAAGTAC 548432 28 100.0 33 ............................ CAAGCCAATTATCAAAGATGACGGAGGTGATGA 548493 28 100.0 33 ............................ CCGAAAAGTTACGGCTAATCGTTCCGATAAGTT 548554 28 100.0 33 ............................ TGTTAAGTGAACTTGGTCAAGCGACAAGTGATA 548615 28 100.0 34 ............................ CATAACGCTATTGAATCGGCAATGTTTGAAAAGG 548677 28 100.0 33 ............................ TTTTGGTAAGACGGGGTTAGCCACCAGTGTGGT 548738 28 100.0 34 ............................ TCTTCTTGGACGGAAGCCGGTAAAATATTCTTTG 548800 28 96.4 33 ..........C................. TGCCATCATGGGGACCACCGGCTAACAAAATTG 548861 28 89.3 0 ..........C......A...A...... | ========== ====== ====== ====== ============================ ================================== ================== 22 28 99.4 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACTCGAACAGACATTGAATTTTTGGCAAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGATGATTTTATAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCCATACTTTCACGGAAGATATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGTATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAACAAAGCCTAAAATAAGAAAAAGTAACATGCAAATCACTCCAAATTTCTTGCGCATTGAAATATTTAGTAAGCGGTTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAGCGCATCAAAAAAATCACATCGCAATGGAAAATGCAGATGTGATCTTTCTGATTGTTCGATAGTTTTTTCGCTGTTGAATCCGCTTATCATTAATACGATGCTCTGTTGAGGCGTAAAAGTAGTACATCTTCAATCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGTATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTAAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGCAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATGCTCGCTCCAATATGCTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //