Array 1 253652-255272 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPNU01000060.1 Lacticaseibacillus rhamnosus strain Lrh38 Lrh38_scf7180000003384, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 253652 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 253718 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 253784 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 253850 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 253916 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 253982 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 254048 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 254114 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 254180 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 254246 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 254312 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 254378 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 254444 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 254510 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 254576 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 254642 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 254708 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 254774 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 254840 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 254906 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 254972 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 255038 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 255104 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 255170 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 255236 35 83.3 0 .......................AA.C...-..T.A | AA [255257] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 98.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : AAACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //