Array 1 3871-3658 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCR01000077.1 Levilactobacillus brevis isolate Q, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3870 29 100.0 32 ............................. GACTATGGAACCGGGGTTGAGGTTAACTTAAA 3809 29 100.0 32 ............................. CATCATTCCGTGCTTCATGGTGTAGCCTCCTA 3748 29 96.6 33 ............................C CAATCAAAAATGGCCGTCAATCCGTCTGTATCC 3686 29 82.8 0 .............A....A......A.GG | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.9 33 GTATTCCCCACATGTGTGGGGGTGATCCT # Left flank : ATGATTTTAATGCGATGGGAGCGGCCTTTTGCCAGGCCCATCCGGAGCAGGTCGTCCAACAGCCGCTAGGTCAGCACCATCAGGCCAGGGCGATAGGGATGCGGGCGCTGGTCGACTTTGCGCGAGAGTATTATCGAGAAAAAGATCGACGCGAGATGAGCTAAAAAGTACAAGATATAAAAGCGTAGTTGTTAACCGCGGTGAACGGAGTAGCGGCTACGTTTTATTGTATTATATAGTCTTCTATCCTTTGATAGTGTCAAAAGGTAGTCACGGTACTTTGGAACAGGCTAGTGATTTGGTGGCCTGGCTACGTAGATTAAGCAACTGGATCGTTACTAGCAATCTAAGTCGAAATTACTTACAAAAGTAAGGCCACAAATTCCAGTTGGATAGATGATTGTTAATCAAGTATGAGTAGGGTATGCTTTAATAGTCAAAGTGATAAAATTTGCTGTTTTCTCTAAACGAAAATGCTGGTATATCAAGGATTCTTTAGT # Right flank : AGACGTTTCAAAAATGATTGTAATGCTGCGCTTAAATCAAAATAGACTTTTTATGGAAAGATAGTTGATAGAGCAGACCACCCAAGTACTAGCAGGCCATGGTGATGGGATACAGGTGTTGATTGATTTTGCACGAGGACATTATCAAAAAAAGGATCGGCGTGAGATGAACTCATCGAGGAGTTTATCGGGTATTCAGGCACGGGGACCGTATAAATGAGGCTAACTGTCAAGAAGTAAAGTGCTGGTGGTTGACAAAGTTAATGGCTCGCGTTATATTAATAATCGAACGATCGATCTTTTAAAAGGAGCCAATCATGCGAGAAAAAGATACGGCAAAACAAACGAGTATTATTGATGAGGTCAGTAATATTATTTTAAACGAGGGAATTGCAGCAGTTTCAATGTCCAAGATTGCTAAAGCAAGTGGCATTTCTTCATCAACGATTTACGTGTACTTTACGGATAAGGAAGATGTGTTGAAACAAGTTTATTTAGCA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1198-3147 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCR01000154.1 Levilactobacillus brevis isolate Q, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1198 36 100.0 30 .................................... AAGAGAATAACCAGCCTAAAAGGTATTATG 1264 36 100.0 30 .................................... AGATGACGCCGGTTCAATTACTCTTGATGC 1330 36 100.0 30 .................................... ACGGGGAAAAGACCTTACCTATCAGCTCAC 1396 36 100.0 30 .................................... ACTAAGTTTTTTCAACTACCACAGGTATTA 1462 36 100.0 30 .................................... AGAACAAAAAACACTTAACCGTAGGAGGTT 1528 36 100.0 30 .................................... CATCTTGATAGGGAAACACAAATGCCAAAG 1594 36 100.0 30 .................................... GGAAGAAGAACGCAAGGCTAAAGAAATTGC 1660 36 100.0 30 .................................... GCAATAGCTCATCTGATCCCATAGTGTCCT 1726 36 100.0 30 .................................... AGGTGTTCAAGTTTTAAAAGAAGCACCTTT 1792 36 100.0 30 .................................... CCCAGCAACAATGTAATAACCAATTAAACT 1858 36 100.0 30 .................................... CCCCCTTTAGTTTCGATAGTGTACGTAGTA 1924 36 100.0 30 .................................... GCCGGGATAAAAATATACAAGCTAAAACTC 1990 36 100.0 30 .................................... TAACGCGAACTCCAATGTCGGCTCTCGCCT 2056 36 100.0 30 .................................... TTATAAGGATTAGGCTTAACACCATCATCG 2122 36 100.0 30 .................................... GTTCTTTAGATTGGTTCTTCCATAGTAAAT 2188 36 100.0 30 .................................... CAAGACACGACCTAACACACACAACACACA 2254 36 100.0 30 .................................... TAGACTATGAGAATAATAGTATTGAATATA 2320 36 100.0 30 .................................... CTGTGTCAATGTCTGATGCAATGAAAGCGC 2386 36 100.0 30 .................................... AATTAGCACGGTGACGAACTCCTTATTAAA 2452 36 100.0 30 .................................... ATGTAACCGTCATGTTTTTCGAGACTTTCC 2518 36 100.0 30 .................................... CAGAACAAAAGAACTTAACCTTAGGAGGTT 2584 36 100.0 30 .................................... GTAGCTCCCCACACGTATTTGTGCCCCTTA 2650 36 100.0 30 .................................... TCCAAAAATTTTATATAGCATGTTATGCCT 2716 36 100.0 30 .................................... TCAATAGCTCATCTGTTCCTAGTGCTTCCT 2782 36 100.0 30 .................................... CAAGGATTCCGATAACTCCGCTGACTCCCA 2848 36 100.0 30 .................................... GCTTCTTGACGTTATTGAACATACCTTTGG 2914 36 100.0 30 .................................... TGATTCTACTTGTCATTGGTTATCGCTCTC 2980 36 100.0 30 .................................... ATTTTTGATTTTTGTTTATGTTATATATAC 3046 36 100.0 30 .................................... TTGATACGAACCCATGGTGCATTGATAACG 3112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 100.0 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAGCCC # Left flank : CAGTGACGGTTTGAGTGAAAAGTACAGTTCGGGCATTTACAAGCAACTTGAAGCTGTATTGGCTGACGATCAGCGAAAATCAATCACAGACATCAATAGCCAGCTGTACACCCTTGTGCAGCAATGCTTATTCATGATTGACCTACCTTTGGAAGTCACCTACGACTGGGATTTGAAGAAGCTGTTCAAATATTGCAGAATTCACTTTAATGCTGATACCATGAAGAACCCATATGCTATAATTGAATCAACTATTAAAATTCATTTGGAATGTGGATTGAAGTCTGCCGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAATTAACTGACTTATCCAAGCTCACAAGTTCTACGGGAATTTCGACATTATTAGTAGAGTTCACAGATATGAAGTCACAGGAGTTTTATACCAATTGCGATTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTTATAACACATTAAAACTTGGTTATAAAAAATCG # Right flank : CAAAATTTTGGTTTTTAATACGCCAGATTGTAAAATTAATTTGAACGTTTTTTGGGATAAAGAAGCGTAGTTTCCTTTAAAATGGTGCGCGATACAAGCCCAATTTTAAGGAGCTGTTTTTAAACAAGGTGTACCCTAAATGGACAAAAAGCAGTATAATCAACTTATGAAGAAAAGCTTAGATTCTGCTTGGGATAACAAGCAGTTCTTTGTTTTTGTCAAACTGTCTAATTAGAGTGTCTAAACAGAATGCAGTAGGGTGGGGGAGACTGATCCTCTGAAAGGAGAGTTATTGATGAAAGTTGGTTATGCGCGAGTTAGTTCAACTGATCAAAATTTGGCCCGCCAAATTGAAGCCTTGAAAGTGGCCAGATGTGAGAAAATCTTTGAAGAAAAACAATCGGGCAAATCGACCCAGAACCGACCAGAATTACAGGCGGCAATTGCTTATGTGCGGCAAGGAGATACATTAGTGGTGGCCTCATTGGATCGGCTTAGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 48378-48045 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCR01000122.1 Levilactobacillus brevis isolate Q, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48377 29 100.0 32 ............................. AAACACTCCTTAGTCTGAGATGCACTTTTTAA 48316 29 100.0 32 ............................. GGCCGGGTACTCTCTGCTGGTCAATCCAGAAA 48255 29 96.6 32 ............................C TAGCGGCGTAGCCACCCCGTTTTCTTCGACGG 48194 29 100.0 32 ............................. TGCATGGGAAGTGGCTCAACGGGTGTCAGTTG 48133 29 100.0 32 ............................. TGACGTAGCCCAACGACTGCTTGATTTTAAGC 48072 28 79.3 0 ....A.................C-..TTC | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCGGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACCACCACAACTTGCAAGGTAATCAGGCTCAAAAACCACCGCACAATCATCAGCCATTTGGCCTAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATAGCACCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGAGAGAAGAACGCGCCAAAGATGAAGAGTATCCCAGTGACGATG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //