Array 1 108408-105447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBN010000010.1 Salmonella enterica strain F5-8 contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108407 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108346 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108285 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108224 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108163 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108102 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 108041 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 107980 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 107919 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107858 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107797 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107736 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107675 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107614 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107553 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107492 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107431 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107370 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107309 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107248 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107187 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107126 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107064 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 107003 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 106942 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106881 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106820 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106759 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106698 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106637 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106576 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106515 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106454 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106393 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106332 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106271 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106210 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106148 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106087 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 106026 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 105965 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105904 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105843 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105782 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105721 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105660 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105598 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105537 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105476 29 96.6 0 ............T................ | A [105449] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126040-124667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBN010000010.1 Salmonella enterica strain F5-8 contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126039 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 125978 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 125917 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125856 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125795 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125734 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125672 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125611 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125550 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125489 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125428 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125367 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125306 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125244 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125183 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125122 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125060 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 124999 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 124938 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124877 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124816 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124755 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124694 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //