Array 1 2469-182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFAY010000056.1 Micrococcus sp. KRD096 Scaffold_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2468 29 100.0 32 ............................. ACCATGTTCGCCAACGGGTCCGACAGGTCCAC 2407 29 96.6 32 ............................G TGGATCGCCCAGCAGTACCCGAACCGAACCCC 2346 29 100.0 32 ............................. GAGACGACGGCCCGCACCACGGTGGAGTGGTC 2285 29 100.0 32 ............................. AGGTAGAGCACTGGTCTCCAAAACCAGAGGTA 2224 29 100.0 32 ............................. CGCCCGGGTGTGAATGAGCGCCGCTACTCGAT 2163 29 100.0 32 ............................. AACGGTGCGTCCACGGAGAAGGAAATCCTGGA 2102 29 100.0 32 ............................. ACCGAGAGGCAGTTCTTCCAGGCGTTCATCGA 2041 29 100.0 32 ............................. TCACCACGCCATTCAAGGTAGACGTTGTAGCC 1980 29 100.0 32 ............................. ACCGAGTTGGCCGGCCCGATCCAGGACCAGGT 1919 29 96.6 32 ............................T GACCCGCGGCCGGCCGCGGCACCTGACGAGCG 1858 29 100.0 32 ............................. GCGGTTCCGACGCCGAGGTGGACGAGGCCCTG 1797 29 100.0 32 ............................. ACCCGCAGGGTGTCCCCGTAGTCCGCCACCAC 1736 29 100.0 32 ............................. ATCTCAGGGTGATCCAGTCGGGAAATGGTCAT 1675 29 100.0 32 ............................. GTGCCGAGCGTCCACAGCATGGACCGGCCGTC 1614 29 100.0 32 ............................. GCCGGGTTGAACTCCAACGCATCCGCGACCAT 1553 29 96.6 32 ............................G TTGGCCGACGTCGAGGCGGCCGCCTCGCAGAT 1492 29 100.0 32 ............................. CTGCCCGGCCCGTTCAAGGTCGAGATCAAGGA 1431 29 100.0 32 ............................. CAGCCTCACACCATGACGGCCGAGCTGAAGCG 1370 29 96.6 32 ............................G GGGAGTCCGACGAGAGGGAGACCCACCAGTAG 1309 29 100.0 32 ............................. TGGACGCGGAACTCTCCCAACGATGCGGCCCG 1248 29 100.0 32 ............................. ACCCAGCCGAGAGCCGCGCGCAGCTCGAGCCA 1187 29 96.6 32 ............................T GGCGGGCCCCGTACAACTGCGACACCAACTGG 1126 29 100.0 32 ............................. CCGCCGACGTGCATGTGCGCGCCCTTGCTGAT 1065 29 100.0 32 ............................. TCTGACCCGGCAACGAAAAGAGGAACCCGTGG 1004 29 100.0 32 ............................. AAGAACCGTGGCAGCTTCCCCGTCTCGACCTC 943 29 100.0 32 ............................. GCCGGAACCCCCGCCATTCTGGCGCTTTAGTT 882 29 96.6 32 ............................G ATGACCTTGAAGGTTCGCCCGTAGTCCAGGGA 821 29 96.6 32 ............................G CCATGACCCGCCGCCCACTAATCCTGGACCTG 760 29 100.0 32 ............................. CTGATCCTCGACGTGGACACGGAGGACTCCCT 699 29 100.0 32 ............................. ATCGAGCAGGATTGGCTCGGCTTCATCCGGTT 638 29 100.0 32 ............................. GTGGATGGCTTCCCCGTGACGTCGGCCCACGC 577 29 100.0 32 ............................. GCCGTTGGCCCCGCGCTCCGCACGCATGGCGT 516 29 100.0 33 ............................. TGGCGGAGAAGGACCGGTTGGACGACTTGAAGC 454 29 100.0 32 ............................. GCGGGCCGGAGCAGCCCGTTCCACACCGTGTC 393 29 100.0 32 ............................. GCCTCCCAGCTGATCGACTGGTTGGAGGTTGC 332 29 100.0 32 ............................. AGGACGACGCCGCGGGAGCCTCGTTCGTCAGC 271 29 100.0 32 ............................. GCTCCGGGGTCCATCTCCACGGTGAGCATGAG 210 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.3 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : AGGGCCGCAACGTCATCGAGCGTCAGTACGCTCACCTGAAGCAGTGGCGGGGTCTGGCGACCCGGTATGACAAGTACGCGATCGTCTACCGGGCCGCTGTGGTCCTGAATGCTGTGCTCGCATGGTCCAAACGATTGTCAGACATGCCCTAGGCGGCAGGGTCATCCGAATAGACGATATG # Right flank : GGTCCGCCACGACCTGGACAACCGGCCCGCCTAGGGCATGTCTGACAATCGTTTTGACCATGCGAGCACAGCATTCAGGACCACAGCGGCCCGGTAGACGATCGCGTACTTGTCATACCGGGTCGCCAGACCCCGCCACTGCTTCAGGTGAGCGTACTGACGCTCGATGACGTTGCGGCCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94111-93777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFAY010000016.1 Micrococcus sp. KRD096 Scaffold_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94110 29 96.6 32 ............................C CAGTCCCAGTTCGAGGTCCTCGCCCCGGCGTT 94049 29 100.0 32 ............................. GGATCAACCGCAACCAATACGTCCCCGTGGAC 93988 29 100.0 32 ............................. CCACATGGACGAGAGCATCCCCTCGGACTGTT 93927 29 96.6 32 ............................C AGGTCGTCCAGGGCGGTGAAGTCGCCATCGGC 93866 29 96.6 32 ............................C GGCGTGCTTCCATTGTGCGGCGGCTTCCACGT 93805 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCT # Left flank : TCGCTATGGAGCGGCCGAGGGGGCCAGGTTGTCCCGGGCGGCGTGAGCTATGGGGACGAATTGTGATGGTGCTCGTTCTGACAGCTGCCCCGGCAGGGCTGCGAGGCGAACTGACTCGGTGGCTGATGGAAGTCGATGCGGGCGTTTTCGTGGGGAACCCCTCTGCCCGCATCCGGGAGGAGCTCTGGAAGAAGACCAGAGAATCAATCAAAGAAGGTCGTGCGTTGTTGATCTACTCGGCGGCCACGGAGCAACGGCTCCGCGTTGAGACGCACCGCCACCACTGGCGTCCAGTTGACGTGAAGGGCCTCACCTTGATGAGACGTCCACTGCCGGACGGCCCGCCCTCCATGGAGGCCCAGAGACGGACTGGATGGAGTGTTGCCCGTCGAGGGCAGCGTGCGTTGCGACCGTCGTGGCGACGAGATCAACACCGCGAAAGTGAATGATTCGTCTGGGCTGATGAGTCAGTAGGCTAGTGATTGGGCCAATTCTCGAGT # Right flank : AGGGCGTGTCTGAGAATAGATGCACGAGTCAGCTGAGACCCTGGGGACATGTCCCGGTTCCAGATGCTCTCTGACACCCAATGGGAGTTGATCGCCCCGATGCTCCCGACCCGGACCGGCCGCGCGCGGGATACGGTGGCCTGGTGAGCCAGAACCCCCTCCCCGCCCCGCGCGGCGACGCGCAGCGCGGCGCCGCCGACCACCACGACCGGGTCTCCGCGATGTTCGACGCCATCGCCGGCCGCTACGACCTGATGAACGCCGTCATGACATGGGGTCAGGAGCCGCGCCTGGTGCGCCGCACGGTGGCGCGGGCCAACATCCCCGCGCAGGCCCGCGTGCTCGACCTGGCCACCGGCACCGGGGACCTCGCGTTCGAGGTGCTCAAGCAGCACCCCGACGCGCAGGTGGTGGGCGCCGACATCGCCGCCGAGATGATGGAGGTCGGCCGTGCCCGCGCGGGCGGGGAGCGCATCGAGTGGGTCGTCGCGGACGCGACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111713-110407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFAY010000016.1 Micrococcus sp. KRD096 Scaffold_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111712 29 100.0 32 ............................. CCACAGGCCCTCGTGGACGCCGTCACCGACGC 111651 29 100.0 32 ............................. GCGCCATCCACCAAGCCCGCGCCGAACAAATG 111590 29 100.0 32 ............................. TGCGGCCTCGTCGTCGCCGACCTCGGAGACAA 111529 29 96.6 32 ............................G TCCCCGACCGCGTTGAAGATCGGCTTCAGCTT 111468 29 100.0 32 ............................. TCGGTCGGGGTCTTCTGTGTGGTGTTCATGGT 111407 29 100.0 32 ............................. CTCGACCACCCCACCCGTGGGCAGATCATGGA 111346 29 100.0 32 ............................. CATGTCGCCGGGCTGCATCCGCTTCGCGGAAA 111285 29 96.6 32 ............................G GTCGCGGCGGCGTACCACGGCGTGCCGTGCGA 111224 29 100.0 32 ............................. GCGCGGAGGAACGAGGTGCGGGAGCTGCCCGG 111163 29 100.0 28 ............................. CTGGTGCTGAATCTCCCTGATGACGAGT 111106 29 96.6 32 ............................A AGTCATCGCACAGGAAGAAGCGGATCCCGTTG 111045 29 100.0 32 ............................. TTCCGGATGCCGTCCCCGACCAACGGGATGCA 110984 29 100.0 32 ............................. AGGTGGTGCGCGAACCCTGGTGTGCCGGGCTT 110923 29 100.0 32 ............................. CACGGTGGCCCCTGCTCGAGGTGTCGCAGCTT 110862 29 100.0 32 ............................. CTGACCGCTGATGAGGCTGCGACGAACATCGC 110801 29 100.0 32 ............................. TGGGGGTGATCCAGCTCAAGCCAACGGGCCGG 110740 29 100.0 32 ............................. CACACCCCGTTCCCGTCGTATCCCCGTGAGAC 110679 29 96.6 32 ............................T CCTCAACCCGCACATGGTGAGGATCGAGCAGG 110618 29 96.6 32 ............................G TCCATGAGCCGGTCAGCGTCCGGGCCGTCCGC 110557 29 96.6 32 ............T................ CAACACCGCCAACGTCTGCACCCTCGTGATCC 110496 29 100.0 32 ............................. TCCCGCCAGAGGGCCGCGCCGGACTCTCCTGC 110435 29 86.2 0 ................TA......G...G | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CGAGATGAGAACGACGGGCCCATCCGCACCGTGGTGCTCAACCTCACGCGGGTGGACCGGATCGACGACGTCGGCCGACGGCTGATCGCCGAGGGCGTGCGCCGGCTGCAGGCCGACGGCGTGCGGGTGGAGGTCGAGGATCCGGAGCGCATCCTGCCGCTGGAGGAGGCCGGCGCCCACTGAGGCGGCGGGGCGGGCAGGAGGGGGGCGCGGCGGTGTTCTCCGTCTCGCCCCCTTTCGTTCAACTGCTGTTCATGTGAGAATGGGCGGTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCGGCCGGTCCGGGTCGGGAGCATCGGGGCGATCAACTCCCATTGGGTGTCAGAGAGCATCTGGAACCGGGACATGTCCCCAGGGTCTCAGCTGACTCGTGCATCTATTCTCAGACACGCCCTA # Right flank : GTGCCGGCGCCAGCCGCCATGGCCTGGATGGCGTGCTCCCACGAGCGGCGCTCCACCGCCACCCCACTCCTCAGCTCTCCGCCTGGCCCTCCCGCCAGTAGCCCATGAAGGAGACGTGCTTCTTCGGCACGCCGCCGGGGCCCACGCTGAGCCGGCGCAGGGCGCGCACCATCGCGGACTCCCCGGCGAGGAACACGTAGGCCTCGGGCCGTTCGTCGGCCTCGAGGGCGGCGACGGTCCACTCGCGCTCGGCGGAGGCCGCGGGCGGCGGGACCGGCCCGCCGGCGTCGTCGGGGTCCACGCCCAGCAGGGCGGCGAGGCGGGCGTGCGCCCAGGACCCCGACGGCGCCCCCGGCGCCCGGCGGCCCACGTGCAGGCGCACGCGGCCCCGGTCCGCCAGCTCCGTGACGGCCCGCCAGTCCCACGGCTCGGGGACGGCCAGGCGCTCGGCGATGAGGTCGGCGGCCTGCCCGTCGTGGGGCAGCTCGAGCACGAGGTCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 786-330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFAY010000090.1 Micrococcus sp. KRD096 Scaffold_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 785 29 100.0 32 ............................. GCGGACTCCCAGTCCATCGCCAGCTTGCCCGT 724 29 96.6 32 ......T...................... CTGACTGACGGACTGACTGACTGACTGAGGGT 663 29 100.0 32 ............................. TTGGTCTTGCCGTCAGCAAGCATGCGAGCCAT 602 29 100.0 32 ............................. GTCCTGACGCTGTTCGAGGACGGCAGGGTAGA 541 29 100.0 32 ............................. GACGCTGCTGCTGTGGACGAGCTGCTTGCCGA 480 29 96.6 32 ............................A CCCATCTTCTCCACGAAACGCTCCGCGATCGT 419 29 100.0 32 ............................. ACGGGCACGTCGTCAAAGTCGGTGAGCCCGTC 358 29 86.2 0 ......T....C.G..............A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GGAAGCCCCGCGCACGCAGGGATGAGCCC # Left flank : GGCCGCCAAGTCCGGGTTGAACCGGGCGATCCTGGATGCCGGGCTGGGGATGCTGCGCCGGCAGCTGGACTACAAGACCTCCTGGGCAGGGTCCCAGGTGAAGATGATCGACCGATTCGCGCCCTCCTCGAAGGCGTGCTCGCGCTGCGGGACAGTCAAATCCACGCTGTCCCTGGCCGAGCGGACCTTCGAGTGCGAGGCCTGCCACCTGGTGATCGACCGCGACGTGAACGCCGCGATCAACATCCGGGCGTGGGCTGTGCAGGAGGAGCGTGGAGCAGGGGTCGAGCTCGCCCGAGGCCGTCGGGAGAGTCGAAACGGACGTGGAGCTGCTGTCTCGGGCCCGCCATCTGGCGGGGCCGCGAGGCAGGGGCGTGGAAGCGTCAAGCCCGCACCCCAGGGTGTGGGCATGTCCAGCCGGGCAACTGGCTGGTCATCCCAACCCCCCTCAACCGAAGGGGAAAGCGCAGAGCGCGGAGCATCCGCCCTGGCCAGGTAGT # Right flank : AGACTCCCAGGGGCATTCACGGCTCCTGGGTTGAGCTGTCGTAGGGATCTGGGCTGGTCCCGGTCCTTCCTAGACACCATCCAGTGCTCGTGACAGCTGCGGGTGTCGTGGAGGTGCTGCGGGGACGTGTCGCGGTGTCCGCGGGATGCTCAGCTGGTGGGCTCGGGGACGGTGGCCTCGCACTGGACCATGGGCATGCCCTTGGGGTCGCCGGTCTGGGCGTCCAGGGGGGCGGTGGTGCCGTCGGCGATGATCTCGCAGTGCAGGTCGCCGGCGGCGGGCAGCTGCGGGACGTTGGCGATCACCTGGATCTTTTCACCGGGCTTGGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGCCCCGCGCACGCAGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //