Array 1 483320-484476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXN010000003.1 Listeria marthii strain FSL L7-0329 NODE_3_length_489856_cov_84.653966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 483320 36 100.0 30 .................................... GGAAGCCCCAGCTTTAATGGGAGCTATTAA 483386 36 100.0 30 .................................... TTGAACTTTTATTGTTCTTATATTGAATTA 483452 36 100.0 30 .................................... GAAGTTTTAGGCGACACGGCTGTTAAAGTT 483518 36 100.0 30 .................................... TGGTGTCGGACCATATCTGCTAAATCTTCC 483584 36 100.0 30 .................................... TGCCCAGAAAGAGGCATTGTATCTTATCGT 483650 36 100.0 30 .................................... TGACGGACTCTGCAAGGCTTTTGTTTGTAC 483716 36 100.0 30 .................................... ATGATTTGCCGGAAAACATTGAAATAACAT 483782 36 100.0 30 .................................... AAAAGTACTAAAGTCCCCAAAGTAGAATAC 483848 36 100.0 30 .................................... TGCTCCCTCAATACCTTTGTTCGCAATGAA 483914 36 100.0 30 .................................... GGATATCATAGACAAAACAGCTCGCATAAT 483980 36 100.0 30 .................................... TGGCACTATGGTCAGTGTAGAAGTTAACTT 484046 36 100.0 30 .................................... AATCGGCATTAGGCAAGCGGAATTACCTAG 484112 36 100.0 30 .................................... CAGTTGCTTTAAATGCTATTTTAGATACTG 484178 36 100.0 30 .................................... ATTACAGTGTGAAAGCTGATCAAAAAGAAA 484244 36 100.0 30 .................................... TTGTGATAGAATTTGAATGAGGTGATAATA 484310 36 100.0 30 .................................... GTTCGTATCCATTAGTTTCTGTCCAATGTG 484376 36 94.4 29 .........................A........C. ATCTGATGAAGATAACTACGCTGAAAAAA 484441 36 80.6 0 ......A......A......A..G........T.TA | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTAAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGGCTGGACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAGAAAAAAATCTACGAG # Right flank : AAGAAATAAAATCTTTCGCATCAAAAGTTCTCGGTAGCCTTTAACAAGGACTATAAAAGTTCAAAAAGGAGGTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGCCGCTCCTACAAAAAAATGAAGATAAGCTGGCTTCCCCTTTCTTCTATATAAAAGATCTAGATTTCTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACGAATGATTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAGGGGGAATTACCATTAAAAGACGAATTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAATGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGGGAGGAGAATCTTCTTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACCCCTGAAAGCTTGATTTTAAGCGACAGAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 232434-233047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXN010000001.1 Listeria marthii strain FSL L7-0329 NODE_1_length_897213_cov_67.478461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 232434 29 93.1 36 .........G....A.............. AATGCTATCTCCCATTTCGTCAAAATTATCAGTCAT 232499 29 96.6 35 ..............A.............. CTATATAACTCCACGTTAGAGCTGGGGCCAGTTTG 232563 29 100.0 34 ............................. CTTGGGATAAAGAAATCATCATAGCTCCCCCACG 232626 29 93.1 38 ..............A..........G... TTCTCAGACGAACCAAAACCTTCGGAGTGCGAAGTTGT 232693 29 100.0 37 ............................. GAAACCGCAGGACAGGCCCAGTTTGCGCGATTTGTGT 232759 29 96.6 35 .......T..................... AGAAGTTCTTGAATGTAACGTAAATCACAACCATT 232823 29 89.7 36 .......T........A.A.......... TACGATGACATCGCAACTTACGAGGGCACATTGACA 232888 29 93.1 39 ......A.......A.............. AATAGACCTAAGTGTGATATGATTTTTTTGAGGGGAAAA 232956 29 93.1 33 ............C...A............ CCTGCCATCAGTTGTTTTATTCCTTGCGATTTC 233018 29 79.3 0 AC.....T......A.A......A..... | A [233039] ========== ====== ====== ====== ============================= ======================================= ================== 10 29 93.5 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAATCATCACATCTGACTCTATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATTTTAGGCCGCGCAATCGAAGGCGTTCAAGAGAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGTTGGGAGTGGTTGGGATTAGGGGAGTTTGGTGGTTTTTGGTTTTAAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TGAGATTTGACTTTTAAAATCCTTACTCATCTTCCAATCCAAACCCGACTCAACAGGATTCGGGTTTATTTTTATCCCCACGTTAACAATTCCGCAACAAACACACCAAAAACCCTCAATTTCCTCCGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAGCCAATACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAACATCCCGAAAAACATGAAAGAACTAGCAAATAATAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGCGAAGTAGAAATTTTAGCTTCCTACAAAGGTGACTTAGAAAAAGGCGATAAAATAGATATTTC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 248006-249006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXN010000001.1 Listeria marthii strain FSL L7-0329 NODE_1_length_897213_cov_67.478461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 248006 29 100.0 36 ............................. TATGAAATTATCTGCGAAGAGGGAAAACTAGACGAT 248071 29 100.0 36 ............................. CCCTTACGAATAACATCTTGAATCTCTACTTGATAC 248136 29 100.0 37 ............................. GTGTTCACGTCTGTAGCACCCACACCAACAATGTTTA 248202 29 100.0 35 ............................. ACCTTAAAATCAATCAGATAATCTGTTTCAATTAT 248266 29 100.0 37 ............................. AATGGCATGTTCCAAAATGGACAAAGCGGCAAAGATC 248332 29 100.0 35 ............................. CTTTTCGACGGTTTAGACAACCATCACGCTTCTTT 248396 29 100.0 36 ............................. TTTAACTTCAACTCTTCGATATAGTCCGTCATGCTG 248461 29 100.0 37 ............................. TACAGACGATTGAGCATATACAATACTTGTTCATTTG 248527 29 100.0 35 ............................. ACAATTCAGTTTCACTATTAACAAAGCGCTAATCG 248591 29 100.0 34 ............................. TCGCCCAGAATTGTAATACAGCATTTGCTTTTTG 248654 29 100.0 37 ............................. CTATATTTATAAACTCGTGCATCGCTTCTGCATACTT 248720 29 100.0 36 ............................. AAAGATAACTATGATTTTGCTGATGTTTCTGACACG 248785 29 100.0 35 ............................. TCATTGACCCGTGGGGTGAACGCGATGGCTAAGAA 248849 29 100.0 35 ............................. TGCAAAGATATCACTGCTAAACACGATTATCGTTT 248913 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 248977 29 86.2 0 ...............C......CA....C | C [248999] ========== ====== ====== ====== ============================= ===================================== ================== 16 29 99.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATAATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCAGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCGGCCACAACTACACAACTCAAAAAGAAAGTCTGCACAGTTTCCGCCATTCCAGCTCCCGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGGAGTTCCTTCTCGACGCCAAATGTTTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //