Array 1 1834-3576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALND010000101.1 Clostridium perfringens strain CP-10 101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1834 30 100.0 36 .............................. TATTCTCCTGTTATAATCCTTCTACTTGAAAGAGAA 1900 30 100.0 36 .............................. AGTGCATGAGAATGTTAACTATAGTAAATTTGAGCC 1966 30 100.0 36 .............................. AAAATATATAAGCGATAGAACTATTGAGAAATATGC 2032 30 100.0 36 .............................. TACTTATAGAGCTAAAAGACAGTTTAGAGGTTCTTT 2098 30 100.0 36 .............................. GCAGATGATAAAGTTGTTGGATAAGTTAGGTTTAAA 2164 30 100.0 36 .............................. TAAACAAAAATAAAAAAATTCTAGCCCAAAAATAAA 2230 30 100.0 36 .............................. TCTTTATGGTATATATGGTTATTTTGGTTTACCGGG 2296 30 100.0 36 .............................. ATATCCAAAATAACACCCCCATAAAATAAATATTAT 2362 30 100.0 36 .............................. TGAAAAACATCTAAACCACAAGGAAAATCAATAGTA 2428 30 100.0 35 .............................. ATAGATATAAATGAAGCTTTGATAAACGTTGCTAG 2493 30 100.0 36 .............................. TAAAATGAGCCGTTAGCAAAAACATATTCAAAAGAA 2559 30 100.0 36 .............................. CTTGTTGGGAATTTAACTATTACCATATCTGAATTT 2625 30 100.0 36 .............................. TCTATAACCCCCGCCCCATCTCTTCCGGGTTGTCCA 2691 30 100.0 38 .............................. TTTTAATAACTTAGCTAAGCTTTATACTTATTAGATGG 2759 30 100.0 37 .............................. TTACCCCACGGAATAGCCCCAACGCTAGCACCACCGA 2826 30 100.0 36 .............................. AGGTATGGTTATTTCTCCAAAACAAGTTGAAAGTGT 2892 30 100.0 36 .............................. AAAATTTTCATCTTCTAAAAACCTCCACAAATAAAA 2958 30 100.0 36 .............................. AAAGATGAAGGGAGTTTTGTTATTATGAATTTGACT 3024 30 100.0 36 .............................. ATTAAACCATTTAAAAATACAAATGAGTTAGTTAAA 3090 30 100.0 36 .............................. TGGTTGATGGTGATGGAGATGCAGATTGATTAATTA 3156 30 100.0 34 .............................. CCTGAAATTTTCCAACACGTTCCTGGTAGAGCAG 3220 30 100.0 35 .............................. TTAATTCTTTTTTCTAATTGGTTAGCATCTGCACC 3285 30 100.0 35 .............................. GCATCAACTATCTTTTTATTTTTTTGAAATTTTCT 3350 30 100.0 36 .............................. TCTTACATTCTAATACTTTATTCCTATATCTACTCT 3416 30 100.0 36 .............................. AGAGTATGTAATTAAAGCAAGAGATGTAGGTGTAAA 3482 30 100.0 35 .............................. TGGTTTTGATACTCCTGTTACTGAAGTTAAAAAAA 3547 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.9 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACCCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGT # Right flank : TATTAATACTGAATTCACTAAAAATTAAGTAACTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGGTTATGAATCTGGGAATGGCTTTATTTTTAAGTTTTTGTCTTTTAGTATGGATGTATGGAGAAAACTTTAATATTATATTTTTTTTACTCTTCAATTATCTTATTAAATACATTTATTTATAAATATCCAGTTAAATATAAAGATGTGTTTAATAAGATAATTGAAGAGTCAAAGAAGAGTTTTGTACCAACTAAACAGTTCCCAAAGGTTAGCAATAATACTAATAAATAATAAAATTAATTACATTAAAGAGGTAACTATTATGAATAACAATAAAAAATTTAAGTTTATAGTGTATTTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 7722-10045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALND010000101.1 Clostridium perfringens strain CP-10 101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7722 30 100.0 35 .............................. AAGTTTCCCCCTGGTATGGTTTAGTCTTTTCAGCT 7787 30 100.0 36 .............................. TAAGTTGTTTAGCAAATTAAAATTTGCCACTTTAAA 7853 30 100.0 36 .............................. TTAGGTAGTTCAATAACAACACCAACTAATTGTTAT 7919 30 100.0 36 .............................. GCAGTAATCATTATAATACCTCCAAAAAAATAATAT 7985 30 100.0 34 .............................. ACAGAAATTTATTAAAGAATTATACCCAAGTGCG 8049 30 100.0 36 .............................. TAATTATTTATTAAATAATTCATAAAACTTGTCCCA 8115 30 100.0 35 .............................. TACTTACCCTCATATTTTTTAGGTCTACCGTAAGG 8180 30 100.0 35 .............................. AATGAAGAAATGTCTACAATGAGAGTTGAAACGTA 8245 30 100.0 36 .............................. AGTGAAACATAAAAAGAAGAGGGTTAATTAAAACCC 8311 30 100.0 36 .............................. ATAGTTCCGTCATTTTTCCATAACTCAAGAACTCTA 8377 30 100.0 35 .............................. CCCCTTTTATTTATAGAGCAATTGATTGTGATTAC 8442 30 100.0 36 .............................. ATTATTTTCATATTTATAAAACCTCCACAAATAAAA 8508 30 100.0 35 .............................. TGAGCAGTTGGTAAACTAACAGTAACACCTAAAGT 8573 30 100.0 36 .............................. GCCATTTGCTTAGACAATTCACTACTTTTTTCTAAC 8639 30 100.0 35 .............................. AGAGCTTTTTGAGTACAAAAATCTTTTTCTTGGTC 8704 30 100.0 35 .............................. CATCCACCACTTACACCAGCTACACTTCCATTCTC 8769 30 100.0 36 .............................. CCGTTAAATAATATTTTATTGTCTTTATGGTTTGCC 8835 30 100.0 35 .............................. AGTGGAGAAGTAGATTTTGATACATTTTTAGAAAA 8900 30 100.0 35 .............................. ATAACTGCCCAACCAATTTGAGCAGAAATCCAAAA 8965 30 100.0 36 .............................. CAACTTCCAGGTAGGTTATGGACTTGGTTAACTAAT 9031 30 100.0 36 .............................. AGAGAAATAATTAACTCTTTCAAATCAGAAAAGCGT 9097 30 100.0 37 .............................. ATGGCTCTGATGTTGGAGCTTTGCCTTGGGAAATGGG 9164 30 100.0 36 .............................. GCTTTGCAAGAAGTAAGCAGAACAACAATTAATATG 9230 30 100.0 36 .............................. AGGTAAAGCAGATATAATAACTCAAGAAGCTAGAGA 9296 30 100.0 35 .............................. TTAAATAAATTTTTAGTTTTAGGGAAGTTTATTAG 9361 30 100.0 35 .............................. GTTCCAAGGCTAGGCGTTGATTGGTATTCAGAAGG 9426 30 100.0 37 .............................. TTTATCATTGCAACTGTATTCAGTCTAAATGATGAAA 9493 30 100.0 35 .............................. AATATACATAGATAACTGTTGGATAGAAAGAAATG 9558 30 100.0 37 .............................. AGATATAGTAAGATATTGCAGATATTTGACTAAAACA 9625 30 100.0 34 .............................. TCTTTTCCTTCAAGATCTTCCATCTCTACTTTAT 9689 30 100.0 35 .............................. AGTTTTAGAGATAGTTCTGTAACGTCTTTAGTTAA 9754 30 96.7 36 ................A............. ACTATTGCATTAGGAATAAAACTAAATTGAGCTCTT 9820 30 96.7 36 ................A............. ATCTTAAAATCACTCCAGTTTTCATAGCCAGTAAAA 9886 30 96.7 35 ................A............. GATCCTGAAGGATGTACTTGGGGAGAAGAGTGCTT 9951 30 96.7 35 ................A............. CTAAGAATGTGAAAATCTGTAGAATTTATTGCGGT 10016 30 96.7 0 ...............A.............. | ========== ====== ====== ====== ============================== ===================================== ================== 36 30 99.5 36 ATTGAACTTTAACATGGTATGTATTTAAAT # Left flank : TAAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTTTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGCTACGGAACCCTAGAAAACTTTATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTGAATTTTAGTATTTAATTAATGCATTCTTAGAAACATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATGAAATTACCATTTAGACCTTGAAATAACTAGATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAGACACTGGTAAAATAATAAGAGAGGTGTTGAAATAACTAGCTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : TGTTCTATGGCCTTTATTTCTATAAGTTCATCTCTAATTGAACCTTAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGGTATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //