Array 1 1813824-1812477 **** Predicted by CRISPRDetect 2.4 *** >NZ_VISF01000001.1 Seleniivibrio woodruffii strain S4 Ga0008828_unitig_0_quiver.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1813823 28 100.0 32 ............................ TTGAGCGTTGACGGCAGGAACGTGCTGGCCAT 1813763 28 100.0 32 ............................ ATTTTGCAGGAGCGCATAAACGATAAGTTCAA 1813703 28 100.0 32 ............................ TACGAGACGCGCAAAAAAATGCACCTCGAAAG 1813643 28 100.0 32 ............................ CTAAGTGCGGCACTGAGTTTGAAGACCATAAC 1813583 28 100.0 32 ............................ TGTGCTGGAATATATCGGCGATGGTCTGGATA 1813523 28 100.0 32 ............................ TCAGTTTCTACCTCAAATGCAAGTTCATTATA 1813463 28 100.0 32 ............................ TCAGTTTCTACCTCAAATGCAAGTTCATTATA 1813403 28 100.0 32 ............................ AGAAACGGCAGTTGAGACTGCTGTTTCTTCAG 1813343 28 100.0 32 ............................ GAATACTGAAGCCCCGTACTGTATAGCCGAGA 1813283 28 100.0 32 ............................ TATCAGCATCAGCACCGTAAAAATAGTTTTAA 1813223 28 100.0 32 ............................ TTGATTTATGTGGTGGAAGCGAGGGGGCTTGA 1813163 28 100.0 32 ............................ TCATTGAGAAATCCATGAGCAAAACCTTTATC 1813103 28 100.0 32 ............................ TGACTGTTGTCTGATACCATTCGTCAAACTCT 1813043 28 100.0 32 ............................ GCAACCTCCCTGCCATTCATCAGTCGCTTAAC 1812983 28 100.0 32 ............................ GCTTTGGATTCCCTCGGATATGGCATGACGAT 1812923 28 100.0 32 ............................ TCACCCAGATATCGCCCATGCCTACTGAGTTT 1812863 28 100.0 32 ............................ TCATAGCCGCCGCCCACTTCATCAAGCAACCG 1812803 28 100.0 32 ............................ CCAAGTGCGAATATCTCTACTGCGGGCTTTGT 1812743 28 100.0 32 ............................ TTCGCAGGGGCTGTTATTCCCTTGGCCATAGT 1812683 28 100.0 32 ............................ TGCCTGTTTGCGGTTAATGAGAGGGATGCCTG 1812623 28 100.0 32 ............................ GATTTCGCCGTTTTCGTTTAGTCTTTTAATAA 1812563 28 100.0 32 ............................ GCCATGTCTTTTCGCCTTTGTATTCCCAGCCG 1812503 27 82.1 0 ...................A.GC.-..C | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAGCATTGGAAAATATAGATAATATTTTTTGAAATAAGTTGCTTGACAAGAGCTTAATAAAACTGTATAAACCCCCTTACCGCTGGTTACAGTGGTGAGAGCCGAGGTGGTGGAATTGGTAGACACGCAGGTTTCAGGTACCTGTGGGAGTTAATCCTGTGGGGGTTCGAGTCCCCCCCTCGGCATACAAAAAGACCCATGTCTTATGACATGGGTCTTTTTGTATTTCGGGGACTCGAACGGCTTTTGCCGCCGACGAGCAGGAGGAAAAGCGCACAGGGATGTGTGCGTCAGGCGAAGGACTGGCCTTTTTGGCTGACTGCACGATGCGGGCAGACAAAAAGCGAGTCCCCCCGAAAGCATCTTTTGAACCCTATTTTTCCTATCTGATTTTTATCCATATTTCAGAGATACTTACAGAAGAGCAAAATAAAAGGGTTTTTACAGCTCAAAAAAGTTTTCTTCCATTGTCAGCGTGACTTCTGTTAAAATTAATCTG # Right flank : CGTCACTCTGAAAACTAGCTGAAGGCTGTATGAGTCCACCTTAAGCTAATTGCCAAATAGAGCACAGAGTCTCATCAAAATCACTTTCCATATCTGCTCCCCATTTTTAAATCATCTTTCACCTAAAAAAATATTTCACAGACGACAGCAACTGACGCTTATGCACGATATAAAGATCAGTAATCCATATGAAAACATGGTAAGGTTTCTGAGGAGGAGATATGGACTACTTCAAGCCGTCAGAGATGAAAACCATAATGCACTCAAAGCGTGCAAACATGTATTATCTGGAATACTGCCGGATTCTGGTCAACGGCGGCAGAGTGGAATTTGCGGCGGAAGCCGGAAGAAAAATCAACTACTACAACATACCGATTGCGAACACAACCGTAATCCTCCTCGGCAACGGAACATCAATAACTCAGGCCGCAGTGCGTGACCTTGCGAAAGCCGGAGTGCTAATCGGTTTTTGCGGCGGCGGCGGAGTCCCGCTTTTCAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1861570-1861000 **** Predicted by CRISPRDetect 2.4 *** >NZ_VISF01000001.1 Seleniivibrio woodruffii strain S4 Ga0008828_unitig_0_quiver.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1861569 28 100.0 32 ............................ TCTGCTATTCATATGCGGAAGCGGTAGCAAAA 1861509 28 100.0 34 ............................ TCGCATTTTCATCAGCACCGATGGGCGCAAGGGA 1861447 28 100.0 32 ............................ TGAAGGATCCGGATCCGGGCAGTACGCACAAT 1861387 28 100.0 32 ............................ TTCGGGGTTTAACTAAGGGAGGGTTGGTCGGG 1861327 28 100.0 32 ............................ ATGTACAGTTAAGGCATCGCCAAATATGTGCA 1861267 28 100.0 32 ............................ TGAACAGATTGATACGCTTATCAGCATAGCCG 1861207 28 100.0 32 ............................ TGAAGGCTGGTTCCCGAACCATGCGGACGAGT 1861147 28 100.0 32 ............................ TCCGTTTATCTGGTCAGCTTCTCAAAGCTGAT 1861087 28 96.4 32 ....................T....... TGTGTCGGTGCGAAACTGCGCCCGAAGGCGTA 1861027 28 82.1 0 .............T..T....G.TT... | ========== ====== ====== ====== ============================ ================================== ================== 10 28 97.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTCAGCCAGAGAACCGTTCACCAGATTGTTCACAGTTCTGCTCACCGTGCTGTTCTCCAGATTCAGCGACTGCGCCAGTGAACCCAGCGAAATGTTATTTCTCCTGCCAAGCTCCACCACCGCATGACACTGAGCCATGGAAAGCCCGCAGCAGTCTGTTATCCTGTCTTCCAGAACACCCAGCCTGCGCTCAAGCTCTATAATAAGATCCCTCAAAACCCGTGACTTTGTATTTTTACTCATATTCAGCTCCATGATTAACTATTGTATATTACAACTATTGCAACACGCAAGCGAAATGATAAAAATATATTGATATTTTTCGATGTGACATATAGATCAAAACCATCAAAAAACAACCCTATTTCTGGCCATAATTTTAAACCTATTTATTTTCTCTTTATTCACAGACACTTTCATAAGGCCAATAAAAAAGGGTTTTTATTGTGAAAAACAATATTTATTTTATTACTCAACAGTGTCTGATAGAATATTTCTA # Right flank : CTCATAGATATGTTCTACGATAAAAATCCCCCCGTACACAGCCGAAGCCATGCAGAGGGGACTATATTCATTATTTACTCTTCAATATGTCTCTTATCTCGGTAAGGAGCACTTCCTCCTTGGTAGGAGCGGGAGGTGCGGCAGGAGCTTCCTCCTCTTTCTTCTTCATGCTGTTGATACCCTTAATGAGCATAAACACTGCAAAGGCCACGATTGAAAAATCCACAACGGACTGGATGAAGCTTCCATAGTTAAGGGTGACCGCCGCTTTATCCCCTGAGGCCTCTTTAAGAGTGATTGCAAGGTCTGCAAAATTGACGTTGCCTAGGATAAGTCCGATAGGCGGCATAATTACGTCCGCAACAAGACTGGAAACTATTTTGCCGAAAGCACCGCCGATGATTATACCCACGGCCAGATCGACCACGTTACCACGCATTGCAAATTTTTTGAATTCCTGAATTATAGACATGCAGCAACTCCTGTTTGATAGATATTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2692457-2693805 **** Predicted by CRISPRDetect 2.4 *** >NZ_VISF01000001.1 Seleniivibrio woodruffii strain S4 Ga0008828_unitig_0_quiver.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2692457 28 100.0 32 ............................ TTCAAAAAGTCTGCGAAGAGGAAGGGCTTGCG 2692517 28 100.0 32 ............................ AACCGGAATGATTTCTGCGTTTATCTCCATGT 2692577 28 100.0 32 ............................ ACAAGTAAATCAGTTTCTTAGAAAGTTCAGTG 2692637 28 100.0 32 ............................ TGATGCTATGAGAAGATTGTCAGGTGTGTAAG 2692697 28 100.0 32 ............................ ATTGTGATGCCGAGCGAAGCAACACCGATACC 2692757 28 100.0 32 ............................ TTCAGCACCATAGCCTTCAGCCACTCATCAGA 2692817 28 100.0 32 ............................ ATCCGGATATACATACGATTCAGCAAATAATG 2692877 28 100.0 32 ............................ ATATGTTCCTACTGCTCCTTCAGATACTCTTC 2692937 28 100.0 32 ............................ TCTTGCGGGTCGCTTGCCCGCAGAGAATAGCG 2692997 28 100.0 32 ............................ TGCGCCGGTTCTCATGTCTTTAACAACCTCAT 2693057 28 100.0 32 ............................ TATCATTATCCATGCCAAACACATACAATGTA 2693117 28 100.0 32 ............................ ATCAGGAAAATGAGTTTGCCTGACATTCTCTC 2693177 28 100.0 32 ............................ TATTGACGGCGGCGAGGTCATCCCCGAACCTG 2693237 28 100.0 32 ............................ TTTAAACTATTTTTGCGGCGTTGTCGCCGTTT 2693297 28 100.0 32 ............................ ACCGAATGAGCGGAACAGAGAGGGCTATGCCT 2693357 28 100.0 32 ............................ ATCTTTATGAGTGCGGAGTGTGCCAACGGTTA 2693417 28 100.0 32 ............................ AGAACTTCGTTTTCTCTTACTCAACTGTTTGC 2693477 28 100.0 32 ............................ AGCTGGGGCGTTTGACCCAATCTCAGTAGGCT 2693537 28 96.4 32 ..............G............. ACCGAGGGAGTTTATGAAATTCCTGCTGTAAC 2693597 28 100.0 32 ............................ GAGAGTCACGACGAACGGCGGGCATGCGAACC 2693657 28 100.0 32 ............................ CGCAGTAAAGTTCTGTCGAACTGACCGCAGGA 2693717 28 100.0 32 ............................ TCCGTGGTTTTTTGCGCATTTAAGTTCAACAT 2693777 28 85.7 0 .............T...T....A....T | A [2693798] ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCAGTTAAAGAAGTTAAAACAGAAAAAGCAACAGATGCGACACAACCTGAAAAGGCTGCCGAACAGCCCGCTCAACCTGTTAAAGCAGCCAACTAACACGCCAATGGCAGAGGTCTGCTTCAGACCTCTGCCCTCCCTATCAGCTCTGCTCCCTTTCATTCATAGCAAAATATTCAGAATAGTGTTAAACTTCGGAATAAAAAATTCGTCGGAGGACAAAAATGGCAACGAAAACAGGCGAAAAATATGTTTGCAAGGTCTGCAATGCGGTTGTTAAGGTTGAAAACGGCGGCAGCGGTGCGCTTATGTGCTGTATGGTCAAAATGACAAAAATGTAATTAAACCCGACTATTCTTTGATCCGTTTATTTGACCCTATTTTTTTGTTAATATTTTTCTATCTATTTTACAAACATTTATAATCGGCCTGAAAATTTAGGTTTTTCACTTATAAAAGCTAATAATCTTTGTGTATAATGTTATTAAGCAACTTTGCCTCTA # Right flank : TATCTCTGATCAGGTAAAACAAATCCACCCCAGCCCTCATTTATTAAAGGAGGCTGATATCCTGTTATCCGAAAAGATACAGAAGAAGCACGCCGAAGATGATGCGGTAGACCCCGAAACCGATGAAGGTGTGGCTTCTGACGAATTTTATGAAAAATCGTATTGAGGCATAAGCCGAAATAAAAGCTATCACAAATCCCAGTCCGAGGTATGAGAACCCAACGGCTTTCAGCTCATGGAAGTTTTTCAGCAGGTCGAAACCTGCGGCGGCGGTCATTACGGGAAGCGCCATGAGGAATGAAAGCTCTGTGCTGGCTTTTCTGCCTGCTCCGGAAAACATAGCACCCAGAATAACAACACCGGCTCTGCTCGTTCCGGGAATCAGAGCCAGAATCTGCGAAAGCCCTGCTATCAGAATATTTCTGAATCCCAACTGCTCAATGGAATGGACTTTAACGGTCATTCTCCTATAGATAAGCTCTGCTATGATAAAAAGTACC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //