Array 1 230504-231751 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMW01000003.1 Salmonella enterica subsp. enterica serovar Gera strain BCW_1595 NODE_3_length_354327_cov_0.600286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230504 29 100.0 32 ............................. GCGACCGCCAGCGCGACGGGCATAACGACCGA 230565 29 100.0 32 ............................. CGATCGAGGATCACCCCGGATACGGTCGCGAA 230626 29 100.0 32 ............................. GCCGCAGAAGAGGCCGAAAAGCGCCGCGGGGA 230687 29 100.0 32 ............................. AAACTTAGCGATGAAGAGTTAATGGCTCAAGG 230748 29 100.0 32 ............................. ACGCTCCCGCGAGAAGTCGCCGTGAGGCATCC 230809 29 100.0 32 ............................. GAGGGGTTGAAAAAGATTGCACAGACCCTGCA 230870 29 100.0 32 ............................. CGCCCTTTATCATTGGGATATCATCGCCGATA 230931 29 100.0 32 ............................. AAATCCACCCGGTAAAAATGAAACGTATTATT 230992 29 100.0 32 ............................. CGGAATCACCAACAACACGCGCGCCCTCCTGA 231053 29 100.0 32 ............................. CGCGTGCCGCCTGGTTGCAGATCTTGACGTAT 231114 29 100.0 32 ............................. TCTGGTGGATATAGCGCACTGAACCAGCGTGA 231175 29 100.0 32 ............................. GCCGGAAAGCGAAAAAATCCCGCTGACAATAT 231236 29 100.0 32 ............................. AATTCCTCAATAACGATCTGCGCCAGGTTGAA 231297 29 100.0 32 ............................. ATCGGCATCGATTACATGGGGCTGGTTAAAAA 231358 29 100.0 32 ............................. GGGCAGAAGAAATCAGCGGTACTGCAAGTAGA 231419 29 100.0 32 ............................. TCATCGGCGGTTTTTCCGACCATCATTGGCTC 231480 29 100.0 32 ............................. GGGGCGGCGGGTGGTGACCTGAGCAGCGGCTC 231541 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 231602 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 231663 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 231724 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 248010-248955 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMW01000003.1 Salmonella enterica subsp. enterica serovar Gera strain BCW_1595 NODE_3_length_354327_cov_0.600286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248010 29 100.0 32 ............................. GCAAAACAGAAACCTGAGCACAGCGGATCTAA 248071 29 100.0 33 ............................. TATACGACGAGTGATACGTCCGGTACGCCGCGC 248133 29 100.0 32 ............................. CATCGGGTTAACGGTTTGCTCGTTCCCTGCCT 248194 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 248255 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 248316 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 248377 29 100.0 32 ............................. GTAGTCGCTGACCTGTACGCCCTGTGTTGGCA 248438 29 100.0 32 ............................. GCAACGTAGAACGAATTATTCACTATAAATTG 248499 29 100.0 32 ............................. TAACGCGCAGATGTTCGACATTGACACGTCAG 248560 29 100.0 32 ............................. GTCACGTTCTGGAGCGTTCACAGCGTGAATTG 248621 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 248682 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 248743 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 248804 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 248865 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 248926 29 93.1 0 ............TC............... | A [248953] ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //