Array 1 225769-226662 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP008747.1 Staphylococcus hyicus strain ATCC 11249 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    225769	    36	 100.0	    30	....................................	TTAGGGTCCCAATAAATCATTTGACCTTTA 	
    225835	    36	 100.0	    30	....................................	TTTAGCAACTTTTTTATAACTATCACCATT 	
    225901	    36	 100.0	    30	....................................	GGTAAAACAACGTACAAGTGAATTTGATAG 	
    225967	    36	 100.0	    30	....................................	CGCTAAAGAGGCACTCTCAACTACTATCCG 	
    226033	    36	 100.0	    31	....................................	TGATGCCCCGGTCAAGCGTTTTTTGTTTGCT	
    226100	    36	 100.0	    30	....................................	AAGATGGTTTAATAGCAGTATGGAATGGCA 	
    226166	    36	 100.0	    30	....................................	AACTTTGACGTACTTCAACAATATTTTACT 	
    226232	    36	 100.0	    30	....................................	TTGATAACTTCGGTTTAGGTGATTTTATCA 	
    226298	    36	 100.0	    30	....................................	ATTTTCTATGCATTACCTTTATGAAGGGGT 	
    226364	    36	 100.0	    30	....................................	TTCATGTCGCCTGTGGGCTTTGTTAAGTTA 	
    226430	    36	 100.0	    29	....................................	TTTGGTAGCCATTTACTTCACAAGAGAGG  	
    226495	    36	  97.2	    30	..............A.....................	GAATATGTAGGTTCTAATATACTGTCACCT 	
    226561	    36	 100.0	    30	....................................	AGAAATACTTGTAAACACAGCAAGCCTTGT 	
    226627	    36	  88.9	     0	...................A...T....G......A	|                              	
==========	======	======	======	====================================	===============================	==================
        14	    36	  99.0	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC	                               	       

# Left flank :   GGCGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTTATCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTGACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATAGCATTAAACCTTGCCCAAAATCTTTGAAAAGATCACTCGAGTTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTTATATTTTAGAATGTCGCAAATATCAAGAAACTGAACTGGTAAAGGTCACATCTAATCCTTTACAATCTTATTATACGACAAAGGTCAAAGTTAGTCAAGGTTAAAGTGGTGTGATTGATGTAAATTGAAATTTATCCAAAATACATAAAGATCAGTGATATCAATGGATTAGACAATCTTAAAAGTTATAGTATACTGTAGCTAGAG
# Right flank :  AAAAGAATAGAATTGGCGTTGTGCGCAGATAGCTTAGTACTTTGTGATTTTAGGTATTTTTATAAGTGTTCTATACATGAAATATGTATGCGATCCACTTATTTTAGGGGTAACCTCATAAAATTGTTTAACTCAAAGAAACTAACGTTGTTTAGATAGAAGTTATAACACTCACTCCACAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGAATTTAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTTGGATACGGTATTGTAGATAGCGATACGCGTGAAATTAAAGATGCTGGGGTACGTTTATTTCCAGAAGCGAATGTAGACAA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//