Array 1 563039-564324 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP046042.2 Streptococcus equi subsp. zooepidemicus strain TN-714097 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
    563039	    32	 100.0	    33	................................	GTACAAAATAGTGTGTTAATATAGTATCATAGC   	
    563104	    32	 100.0	    33	................................	CAGAGATTGATATCCAAAAAACAAAATCCAATG   	
    563169	    32	 100.0	    35	................................	CTACCAAGATATTTGTAACAATCTTGGAATGGATT 	
    563236	    32	 100.0	    34	................................	CTGAAGCAATAGCTAACAATCCCGCTTTACAATT  	
    563302	    32	 100.0	    33	................................	AAGCTTTTATATGGCTGATAAACTGCTTGGAAA   	
    563367	    32	 100.0	    35	................................	AAGGTATTGAGGAAAAAATTGCCACTGGCAAAAAA 	
    563434	    32	 100.0	    34	................................	ATTGCTAACACTAGTAAAATTACCTCGTAGTGTC  	
    563500	    32	 100.0	    34	................................	ATGGTTAATGTCCAAAAATTAAAAGGTGTGATTG  	
    563566	    32	 100.0	    35	................................	AAATCAAGGGTTGAAAACTTTGTAATTTTTGGCAT 	
    563633	    32	 100.0	    34	................................	CATTGAATCGCCAGCTACTTTTGCAATAGTATCA  	
    563699	    32	 100.0	    34	................................	CATTGAATCGCCAGCTACTTTTGCAATAGTATCA  	
    563765	    32	 100.0	    35	................................	AGCTTTTAATAAGTTGTCAAGACTAACAGTACCAT 	
    563832	    32	 100.0	    35	................................	ACTAAAATATGCAAAATAATGAATAAAAAGGAGAG 	
    563899	    32	 100.0	    33	................................	AAAGGAAGATGAGTACTTGGCTAGACGACTTAA   	
    563964	    32	 100.0	    33	................................	CTAAAGAGGTGACGGAATGAATAAAAGCGAAAT   	
    564029	    32	 100.0	    34	................................	TCAGAAACAAATAGCTGAACAAATGAAGATTTCC  	
    564095	    32	 100.0	    33	................................	GTGTATCGCAGACATGCATTGCCTTGCGTTTCG   	
    564160	    32	 100.0	    33	................................	TGCGAGATTAACTTACTGCACATGGATTTTATC   	
    564225	    32	  87.5	    36	........C..TGC..................	CTAAAAGACTTTCTGATTTTAACCAACCCTGACAAC	
    564293	    32	  84.4	     0	........CCAT.C..................	|                                   	
==========	======	======	======	================================	====================================	==================
        20	    32	  98.6	    34	GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT	                                    	       

# Left flank :   TAAGGCTATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAATGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCTTACTTCTGTAAAAGGAGCGAGTGCGAGCCTGGATTACTCATAAAATGCTGGGAGGCTCGCGCTAAAATAAGCTAAAAAATGGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTATATCATTTCTCTATAAACTGTGCTATATTGCGCA
# Right flank :  TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATTAAGGTGTTCAAAGCTGTTTTGAAGGGGTGATTGAGATGAGGCATAACTCAAAGAAGAGCTCTGTATTCTTTTCTTGCAAATGAAAAAGAGGCAGCTGATAAAGGTCATAATAGTC

# Questionable array : NO	 Score: 9.19
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,10] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-5.40,-2.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0.37   Confidence: HIGH] 

# Array family : NA
//