Array 1 325976-327660 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDX01000019.1 Streptococcus agalactiae strain RBH05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 325976 36 100.0 30 .................................... TTTAATACCTGAAATACCACCTATCACCTT 326042 36 100.0 30 .................................... GACCATCAATGTTAATCCATCGATAAATTA 326108 36 100.0 30 .................................... AGACTTAGATTCTATTCAAGACATGGTTTT 326174 36 100.0 29 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCT 326239 36 100.0 30 .................................... CCGTCAAACAAGAGCGACAGCGAAACAAGC 326305 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 326371 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 326437 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 326503 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTGATGATGG 326569 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 326635 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 326701 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 326767 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 326833 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 326899 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 326965 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 327031 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 327097 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 327163 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 327229 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 327295 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 327361 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 327427 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 327493 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 327559 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 327625 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //