Array 1 979228-980187 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UHEM01000002.1 Streptococcus agalactiae strain NCTC8180, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    979228	    36	 100.0	    30	....................................	CTATGTTACAGCGTAACGAGAAATCAAAAC	
    979294	    36	 100.0	    30	....................................	ATCGCCTTTTTCTAAACTGGCAGATATTCC	
    979360	    36	 100.0	    30	....................................	ATATCCCAAGCGTACCACCATTTTGCTGCG	
    979426	    36	 100.0	    30	....................................	CAAATTGCGCAGACACAACAATAGGTCTAT	
    979492	    36	 100.0	    30	....................................	CAAATTGCGCAGACACAACAATAGGTCTAT	
    979558	    36	 100.0	    30	....................................	GAAAAAGGATTATGATAATTTCTATCTGCT	
    979624	    36	 100.0	    30	....................................	GATGAGACCACAGAAGTTAACTATCTCAAG	
    979690	    36	 100.0	    30	....................................	GCAAATATTTGGATAGTCGACCCTTCCCAC	
    979756	    36	 100.0	    30	....................................	TAATACTAATTTACTAGCGTCAAATAAATC	
    979822	    36	  94.4	    30	...........A..C.....................	AATTTCCATAATCTGATCGCCAACCAGGAG	
    979888	    36	  97.2	    30	..............C.....................	CAAATTATAAAACTTTCATTAGGAGTGACG	
    979954	    36	  97.2	    30	..............C.....................	TATCTACATGACAAATATTCAAAATTTTGT	
    980020	    36	  97.2	    30	..............C.....................	CAATATACCAACCAATCCTGTTACCTGATT	
    980086	    36	  97.2	    30	..............C.....................	CAATATACCAACCAATCCTGTTACCTGATT	
    980152	    36	  97.2	     0	..............C.....................	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	  98.7	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGTATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGCACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGATTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCAACGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CATTAAAAGATGATTGTGGAGGCGTTGCAATGTTTTAGAGCTGTGCGGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGGACGTCATTTATAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCAATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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