Array 1 122777-123342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHJS01000001.1 Yersinia similis strain Y252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 122777 28 100.0 32 ............................ ACTTGTGTAGACAAGTTACTAGAAAGCTACAA 122837 28 100.0 32 ............................ AATGGGAAGATGTCGAGCCTAAAATGATTGGC 122897 28 100.0 30 ............................ GCTTAAGCCCGTCTCGCGTTCTATCAAGAT 122955 28 100.0 32 ............................ AGATACGCGAGTATGTTGAAGATTTTTATTGG 123015 28 100.0 32 ............................ AGATATGACTCGATAACTTCTTTAGTTGCTGG 123075 28 100.0 32 ............................ TTAAGAACACCGACCCCCGGTGCGCGAGCAGA 123135 28 100.0 32 ............................ GTTCATTGTGTAGCGCGGCTCGTAGTCTCCCT 123195 28 100.0 32 ............................ TTGATTGAAGCTATGTAATTGGGCGCTGCATC 123255 28 100.0 32 ............................ AATTAAGGAACTGCCAAGGCTCATCAGCCTTT 123315 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCGGCTACAATCTCAATCGAGGTGATGAACCCTGGCAGGTAGACTATCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCGCACCAAGCAATGCCGCACCTAATCCGCAATAGACGATACCGCGTAACCGCACCAATTAGCCAAGAGTAGAGACCCACAGCCCCGGCAATGGAAGCAATTTGGCTGGCGGCAACCAACCGGAACCCTAAATAGCGCCCATTCCAATAAACGTCAGGTCGATGAGCGCCAGCTGTTTTTTAAATTTGCCCTGGACAGGCCAGAAACATTGGCCGCAGCTCCGCCGTTCTCCTCAGAAGAATAATCATTAGGATCCGGTTACATCCCCATAGATTCTTGTGACCCTCTTTTTTCCACTATTACTAACTTATTGATTTTTATGCTTCTCAGGTGTTTCACTAAAAAAAGGGTTTTTACGCATTTTTCGCAATTGCTAATTGATAAATATCAGCTTATCCGTATTATCTTACT # Right flank : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGCACAGGCAGCTTAGAAAATGCATATCCATCTCTAATTCAACTTGACGCGCTTCACTGCCGCACAGGCAGCTTAGAAAGGTATTCTGCCGCGAGTTAGCCAACTGGCAACGTTCACTGCCGCACAGGCAGCTTAGAAAAATAATTAAAGCCTTAGTAATGGCTCTAACTGGTTCACTGCCGCACAGGCAGCTTAGAAATGACTGCTAATATTAAAAAAGAGCATTGGTATGTTCACTGCCGCACAGGCAGCTTAGAAAAGAGTGCATTGACGTGATTAACCCATCATGACGTTCACTGCCGCACAGGCAGCTTAGAAANNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 123500-123827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHJS01000001.1 Yersinia similis strain Y252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 123500 28 100.0 32 ............................ ATGCATATCCATCTCTAATTCAACTTGACGCG 123560 28 96.4 32 C........................... GGTATTCTGCCGCGAGTTAGCCAACTGGCAAC 123620 28 100.0 32 ............................ AATAATTAAAGCCTTAGTAATGGCTCTAACTG 123680 28 100.0 32 ............................ TGACTGCTAATATTAAAAAAGAGCATTGGTAT 123740 28 100.0 32 ............................ AGAGTGCATTGACGTGATTAACCCATCATGAC 123800 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAAGATTTTTATTGGGTTCACTGCCGCACAGGCAGCTTAGAAAAGATATGACTCGATAACTTCTTTAGTTGCTGGGTTCACTGCCGCACAGGCAGCTTAGAAATTAAGAACACCGACCCCCGGTGCGCGAGCAGAGTTCACTGCCGCACAGGCAGCTTAGAAAGTTCATTGTGTAGCGCGGCTCGTAGTCTCCCTGTTCACTGCCGCACAGGCAGCTTAGAAATTGATTGAAGCTATGTAATTGGGCGCTGCATCGTTCACTGCCGCACAGGCAGCTTAGAAAAATTAAGGAACTGCCAAGGCTCATCAGCCTTTGTTCACTGCCGCACAGGCAGCTTAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCACTGCCGCACAGGCAGCTTAGAAACGGTATTGCGCGCGGATATTTTATTGCAAATGGTTCACTGCCGCACAGGCAGCTTAGAAAAGAAGGAACAGACTGTTGTGACGGATAATAACGTTCACTGCCGCACAGGCAGCTTAGAAAAGTTCATGAGATACGGAGTTTAGCTTCACGACGTTCACTGCCGCACAGGCAGCTTAGAAAAACCATCCGGTATCTCCAGAGAGTTCAACCGTGTTCACTGCCGCACAGGCAGCTTAGAAATTGTGAGCTACTTGTCAGCTACTAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 124032-124659 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHJS01000001.1 Yersinia similis strain Y252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 124032 28 100.0 32 ............................ CGGTATTGCGCGCGGATATTTTATTGCAAATG 124092 28 100.0 32 ............................ AGAAGGAACAGACTGTTGTGACGGATAATAAC 124152 28 100.0 32 ............................ AGTTCATGAGATACGGAGTTTAGCTTCACGAC 124212 28 100.0 32 ............................ AACCATCCGGTATCTCCAGAGAGTTCAACCGT 124272 28 100.0 32 ............................ TTGTGAGCTACTTGTCAGCTACTAACAGTTAT 124332 28 100.0 32 ............................ AGAGATAAAGGATCGGAAAGACGGCAGAAAGA 124392 28 100.0 32 ............................ TGAAAGCCATAAGTTGCAGGGCGGAAGTCGTA 124452 28 100.0 32 ............................ TGACTGAACACAGTGAACCCGTACAGTACCCA 124512 28 100.0 32 ............................ TATGAAATGTATGTAGAAAAAGAATGGGTGAT 124572 28 100.0 32 ............................ CTCCCGGTTGGGTGGGCGTTCGTTGTGTGAAT 124632 27 85.7 0 .................T...CC.-... | T [124658] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATATCCATCTCTAATTCAACTTGACGCGCTTCACTGCCGCACAGGCAGCTTAGAAAGGTATTCTGCCGCGAGTTAGCCAACTGGCAACGTTCACTGCCGCACAGGCAGCTTAGAAAAATAATTAAAGCCTTAGTAATGGCTCTAACTGGTTCACTGCCGCACAGGCAGCTTAGAAATGACTGCTAATATTAAAAAAGAGCATTGGTATGTTCACTGCCGCACAGGCAGCTTAGAAAAGAGTGCATTGACGTGATTAACCCATCATGACGTTCACTGCCGCACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : ATCTCAGCTATCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGTTCAGGGCTAAGCGCTGAACGGCGATGCTGTAACCAGCGCTGTTGCTCACGGTCATTCAAGGTATTCGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCGGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCGGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGTGAATGGCTCCGCTTGTGCAAACAGCGCGACCACTCTTTCACGCACCTGTGGGTTTTGACGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48842-47733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHJS01000036.1 Yersinia similis strain Y252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48841 28 100.0 32 ............................ ATATCGGAAACACAATATTCGGCAGTTACCAC 48781 28 100.0 32 ............................ AAAATGTCACGGTTGGCCAGAACCACGCAACT 48721 28 100.0 32 ............................ CGGTGCAAGTGACCGGGTTTGAAATGAAATCA 48661 28 100.0 33 ............................ CTACAAGCGGGTAAGAATAATCTCTTTAATTAC 48600 28 100.0 32 ............................ TCGACCGCGAAAGTGAAACCGGCTGCTTTAAT 48540 28 100.0 32 ............................ GTATTGAATGTGGATGCTTTAATCTGCTCTTC 48480 28 100.0 32 ............................ ACGGCGGCGAAATTATTCCTGTCTACACCACC 48420 28 100.0 32 ............................ CAGTAAAGCGGTTGCGCCACGCAACGGGCGAT 48360 28 100.0 32 ............................ AAGCACAATCGCCGGTTATAAGAAGTGTATGA 48300 28 100.0 32 ............................ GACAATCACAACAACAATCACTGCCACCACAG 48240 28 100.0 32 ............................ ATCGCATCAGCTTGTAACGATTCCAGGATAAG 48180 28 100.0 32 ............................ TTCAGCAGCAACGCCAGCGCCACGATTCCCGA 48120 28 100.0 32 ............................ TCAGGCTGGCGGCGAACTCCCGCAAATCACGG 48060 28 100.0 32 ............................ ATCGGCTTCGTCTATCATGCATCCCTCACCAC 48000 28 100.0 32 ............................ AGTGGCTTAGGTGATTACGAGTGGTTTTACTT 47940 28 96.4 32 A........................... ATCCGTGTAAAGGGGCAGTTAAACCCCTATGT 47880 28 100.0 32 ............................ GGAAAGATACTGGCTCATAAAGATCCTTACGC 47820 28 96.4 32 ............C............... AACCTACCTGCTAGTCAATATCTCCCGCGTAA 47760 27 85.7 0 ...................A.A-.T... | C [47736] ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATTGCTGCCCGCGGCGCTGGAGGGTGGCCAGAACTACACGGTGTAGCACCAGGTGGATCACCACAGAAATCAATAAGATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCATTGCTCCTTTAAAACATCAATCTGACGAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCAAAGGGGGAGACATATTTATATGCTGTGGTTTATGACATGGTTTGTGGGATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTTCATTGTAGTTACCGGTGGTCTAAAAAAGGGTTTTTTCCCTATTAGCGAAAGAATTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TCCTGGACCATGCTCTGATGCTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGATAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAAGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAGCTGCATATGTGTTGGCTGCTTTCGTCCTCCCAGTAACTTACTGGCGTAAGCTCTTGGGGATTTACTCAGTTGCCGCCTTCTTGCAACTCGAATTATTCTGAGTATAGAGAGAGTTATTTTTTGGAATAATATCCACTTGGTACCTAAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCTCTAAGGAGTTTTATTTCCATGGAAAATGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGGGGGCGAGTTGAATATGTCACCGATGAAGGTAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //