Array 1 608803-609195 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFAG01000001.1 Deinococcus aerius strain TR0125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 608803 37 100.0 35 ..................................... AACCTCTCCGATCTCACTGCACAGCTCGCGGCGGA 608875 37 100.0 33 ..................................... GTAGCACCGCCGAACTCATCGTCTCCATCACCG 608945 37 100.0 34 ..................................... ATCAGCGGCCAGATCATGCGGGCCGAGTACACGC 609016 37 100.0 35 ..................................... ATGCGGAGGCCGGACGATTTCACCCACGAATCGGT 609088 37 100.0 34 ..................................... ATCAGCGGCCAGATCATGCGGGCCGAGTACACGC 609159 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 100.0 34 GTTGCAGCCTGCCTTCGGGTGGGCTGAGGATTGAAAC # Left flank : CCGAGGCGTTTGACGTGGCGCTCGACCCCGATACGGATTTCCTCGCCGCCGAGGAGGGCTGGAGGACGCTGGCCGCCGCCGAGGTGCTGGTCGCGGTCCTGACGGGGGAGACGGCGGGCATGACGGACGCCGCGCTGCGCGCCTGGGTGGCGGAGGCGGACCCGGTCAGGCTGGAATTGCTGCGTGAGACGGCCCGTGAAGCCGTCGCCCGTGTCCTCGCCCCCGACAGCGAACTCCCCGACCTGTGGGCCGAGGGCGAGGACGCAGAGGCGTGGCGGGCGGACGTGCGGCGGTTGCTGGACGCGCTGGAGTAGGGCCTCGCGCGCGAACTCCCCGTGACGGGCGCAAGTAGGGGAAGTTCGCGCAAGCCGGAAAGCCCGCCCAGCACGCGCCGCGTGTTCAGCGCCAGAGTTCCGTGCGTACGAAACTGGACGGCGGGTGCCGGGTTCGCGCAGAATGCGAAGCGGAACGTGCGCTGGATAGGCTCTGGCGTTCGCACC # Right flank : ACGAACGCCATCTGCTCCTCCTCGGTCAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTGCCTTCGGGTGGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : NA // Array 1 16655-16038 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFAG01000025.1 Deinococcus aerius strain TR0125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 16654 37 100.0 34 ..................................... CTGGTGACCCGCGCGGCGGCGACCCAGACCCGGG 16583 37 100.0 36 ..................................... CCGGAGTTGACGTGCTGTGCGGAGGCTTCCCCTGCC 16510 37 100.0 35 ..................................... AGCGCCCGGATGGTCTCCAGCGCCCGCCGGTACAC 16438 37 100.0 37 ..................................... CGGCGCCTCACCTCCGCGTCCACCTCGGCGCTCGTGG 16364 37 100.0 35 ..................................... CTGGCGAACTCCCGCGCCGAGCTGGACCGCCAGGC 16292 37 100.0 35 ..................................... CTGACCGCCCGCCTCGCCCACGTCCACTTCATGGC 16220 37 100.0 36 ..................................... CTCTCCAGCCTGGAACCCACCCGGCACGCGCTGGAG 16147 37 100.0 36 ..................................... AAGTGGGTGAAGACCCACCGCCGCCACCGTGACATG 16074 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 100.0 36 GTTACAGCCGTCATTTAAGGCGGCTGAGGATTGAAAC # Left flank : CCCACTACCCACCGTACCTCCACCGCTAAAGTCCCATGATCGACCTCCTGATCACCTATGACGTGAGCACCGAGACCAGTGCTGGGCGCAAGCGCCTGCGCCGGGTCGCCAAGATCTGCGTTGCCCACGGCCAGCGCGTGCAGAACAGCGTCTTCGAGGTCAGCGTGACCGAGGTGCAACTGCTCGCCCTGCGCGAACAGCTCCTGAACGTCATGGACCCCACCGAGGACAGCGTCCGCATCTACCGCCTGCGCCAGCCCCGCGAGAAGTTCGTCGACGCCTTCGGCCGCGATCAATACCGGGACCTCAGCGCCCCCCTGATCCTGTGAGCCCCGCGCGAACCCCACGGTATGCACAGGAGGAGGGGGGTTCGCGCGCTTGCCGGAGTGCGGCTGGGATGCGCTGGGGGACGAAGGCCTGGGCCGCAAACCAACGCCAGTGATGGGGTCGGCGCAACTTGGCGAGAGAACGGCGTTTAGGAACGTTTGAAAAGCGGAACC # Right flank : CAGGACAAGACGACCCGCAGCGGCTCCTACGTCGTTACAGCCGTCATTTGAGGATTGAAGCGTGGGCTTCTTGCTGTCCAACGGGTCCTGAGGGCCGCGATTCCAGCCGACATTTGCAGCGACTGCGGTTGGAGCGTCGCCCTGGTGGAGTGGCGGGGGTGCCACGCCCCAAGCCCCCTCCTCACTGGATTACACTAATGTCAATTAGTGTGAAAACCCAGCTCACCACCCCGGTCTGACTCCATGGTTGCGAGTCTGCCGTTTGTTGTCCGGGTTCCGGCGGGGTGGTGAATCTCCCCGCCGATCTACGGCAGGCGGGCCGTGGCCGCGCGCAGCAGGCGGGAGAGGACCTGCGGGGACGCGCCGCCGGGCCGGGTGAGCAGCACCCGCACGAGCATCCCGGCCCGCTTCGGGGAGTAGGCGAAGGCCTCGCCGGGGACCAGGAAGGCGTCGGTGCCCGCGCCCTTGACATTCTGGAAGCCGCTCCCCGCGACCTTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCCGTCATTTAAGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 62021-61108 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFAG01000021.1 Deinococcus aerius strain TR0125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 62020 37 100.0 35 ..................................... CGGACGCTCATGGTCGAACCCGACCGTTACAACCT 61948 37 100.0 35 ..................................... TTCTTCAGAGCGGGAGTCAGCGTAGCGACGAGATG 61876 37 100.0 35 ..................................... CCGCCTAACGCTCCCCCTCGCCCTGGCCTACATCC 61804 37 100.0 35 ..................................... TTCAGCCCCGCCCGCCGCGCGAGTCTCGCCAGCGC 61732 37 100.0 35 ..................................... GAGACGGTGGCGAGAAGCGCGGCGTTCTGCTCCAA 61660 37 100.0 35 ..................................... TGTCATCACAATGCAGAAGATGGTCAAGGCAACCG 61588 37 94.6 37 ...................G.........G....... AAGTTCAGCGGCGAGGAGACCAATCACGCTGCCATCG 61514 37 97.3 39 ...................G................. CGAGGACATTCACACGCGCGACGTGGCGCCGCTCCTGCG 61438 37 97.3 37 ...................G................. TTCACACCGCCGTTGATGCGGTCGGCGTCACCGGGAA 61364 37 97.3 36 ...................G................. ATTAAGTTCATCGTGGGTGTCTCCGAGGACGACCTG 61291 37 97.3 37 ...................G................. AACGGCGGCGATATCGTGAGTGCCAAGCTCTACGGAA 61217 37 75.7 36 AC...T.T..C........G.........G.C..C.. TCCCAGTAGAACGACCGGAAAGGAGCGTCAGAGCCG 61144 37 75.7 0 A.CC.....GCC..........G....C.....C... | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 95.0 36 GTTTCAACGATTTCCCCGAACGTTAGGGGACTGAAAT # Left flank : CC # Right flank : ACGCACCTCTTGGCATTGACCGTGCCCCTGCGCCGGGAGCCTCGTCCGGGTACTTGGTTGGTACGGAGTGGGCTATGCCCTCACTCCGGGCTCTGGGGTTGAGGGCAGACAGTTCTGCCGACGCGACCCGGCGCAGGAAGCCAAATTACTGCACCTTGAGGGTCCAGCCCTCCGGCGCTTCCCGGTCCCCGAACTGAATCCCCGTCAGCTCGTCGTACAGGCGGCGGGTGACCGGACCCACCTCGGTCTCGGAGTAGAAGACGTGGAAGTGGTCGCCGTTCTGGATGCCGCCGATGGGCGTGATGACGGCGGCGGTCCCGCAGGCCCCGGCCTCGCTGAACTCGCCCAGGCGGTCCACGTACACGTCGTCCTCCCGCGCATCCAGGCCCAGCCGCTCGCGGGCGAGGTGCAGCAGGGAGGCGCGGGTGATCCCCGGCAGGATCGAGGGCGAGCGCGGGGTGACGAAGCGGCCATCCCGCGTGATGCCGAAGAAGTTGGCC # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGATTTCCCCGAACGTTAGGGGACTGAAAT # Alternate repeat : GTTTCAACGATTTCCCCGAGCGTTAGGGGACTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 721-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFAG01000029.1 Deinococcus aerius strain TR0125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 720 37 100.0 37 ..................................... TGACCGCGCAGACGGCCGCCGAGCAGCGGCAGTGGCA 646 37 100.0 36 ..................................... CCGGCTCGGGCTCAGGGGACGACGAACTTGCCGTAG 573 37 100.0 36 ..................................... TCCTAGCGCTGACCGCCATCCCCGAGGTCGAGCGCC 500 37 100.0 36 ..................................... TGGGGCGCCGTCTCGACCTCGGCAATGATCTGCTCG 427 37 100.0 36 ..................................... CTGACCATGCTGGGCAGGCGGCAGCTTTTGGGCTGG 354 37 100.0 35 ..................................... TCAGTCATGGCTCACCCCCTCTGCCGCAGGGGCGG 282 37 100.0 35 ..................................... ATCCCGGCGGTCGTCGCCTTTCCGATCCCCCACAT 210 37 100.0 37 ..................................... TGGCGACCGTGGCCCGGGGCGGCGAACCGATCAGCGA 136 37 100.0 37 ..................................... TGACCGGCGAGGAGAGCATCGAGGCCTGGATCACCGA 62 37 94.6 0 ............................AG....... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 99.5 36 GTTTCAACGATTTCCCCGAACGTTAGGGGACTGAAAT # Left flank : CCCGGAGGCGGTGCCTTACGTCGCCTACCGCCGCTGGCCGGGCCAGATAGAGGGCAGCATGGACGGCCCGTGCTATGTGCTGCGGCTCAGGGCGCCCCTCAACCGCGACCACCTGCCCGTCGAGGTCATGGCCTGGATTCGCGGCTGGGGGCCGAGGGTCGAGGTCCTGTCGCCCGCATGGGTGCGCGACCTCTGGCTGGGCGAGGCACGGGAACTGCTGGCGCGCTACGGCCCATGACCGCAAGAGAGGGAGTTGCCGCCAGAGCCCCGCGATTTGCGATCCGTCCTGGTGGGCATTTCCGGGAGAGGCTCCCCCTGGATGCCCGGGCAGGGCAGACTGCCCGGACCGGGTCACGTCCTCCACGCGCCGCAAATCGCCAGGTTGGAGGCGTTCTCCGGCTTTTGCGAACGCCGCCAGCGGGTAGAATGAATGCCGTCCTCCACGTCGAGGCGAGTTGCATGACAACTTCTGCCCTCTCGAAAAGGGGGAAAAATCAGCC # Right flank : TTCACCCGAGCGCGATGTCGCGCCGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGATTTCCCCGAACGTTAGGGGACTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 252657-253121 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFAG01000004.1 Deinococcus aerius strain TR0125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 252657 37 100.0 34 ..................................... CGCCGTTTGCGTCTCCCCCACCGTCACCGGCATC 252728 37 100.0 36 ..................................... CGGTCATGTCGTCCTCTCTCCTAGGTCCGGCATCAG 252801 37 100.0 33 ..................................... GTGCGGCTGCTGCGGGGGCGTCCGAGAGCGAGT 252871 37 100.0 35 ..................................... CTCGGTGGGGCTGATCCGCCCCATGTCGGCCTCGA 252943 37 100.0 34 ..................................... AATCCCTTGATGCTGGCGAAGGCCGCGGCCCTGC 253014 37 100.0 34 ..................................... ACCGGCCGCACCCCGGACGCCTTCGGGAACGGGC 253085 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 100.0 34 GTTGCAGCCTGCCTTCGGGTGGGCTGAGGATTGAAAC # Left flank : GAAACGCTGGCCGGTGCCCACGCCGCCGTGCTCCGGGTCGTTGCCGCTCTCGTAGGCCATCAGCTTGGTGCGGCTCGCCTTCTTCGGCCCCAGCAGCGCCGAGACGACCACCGCCAGCACGCCGATGCCCAGCGCGATAAGCAGCATGATCACGAAATTCGCGTACTCGATGGGAGTCTCCCTTCTGCCTCTGTTTCTCTACTCCTACTACTTTGTGAAAAAGAGCACTAGCGGGAGTAAAAAAAGAGAGGGCTGACGAACCTGATCCGAACCGACTTGTGGTACGCCTCATGTTCTATCACGAAACGGCGCCTGAGACGATGCGCGAACCTGGTTTGGTGGGGGGAAGGTGGGGGTCTCGCGCCGCCGGAAAGTACAGGCGTCGCGCAGCTCCTTTCCCTCGAGGCGGGGCGGGCGGGCTGTTCCACCCCTCCTTCAATAGGGAGTTCGCGTTGCAACCTGCGGAACTTGCGTTCTGGTCGAGGAGCGGCGACACTACC # Right flank : ACCAGCAGCTCAGCGGTGCCGGGGCTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTGCCTTCGGGTGGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 1 10903-10028 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFAG01000007.1 Deinococcus aerius strain TR0125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================ ================== 10902 37 83.8 38 ....TGA............T......G..G....... GCTGCCGAACTGCAACGCATCCTGATCGGCGAGAAAAA 10827 37 89.2 64 ..............A..T........G..G....... CCCCCGCCCCGCCGCGCGGACACCCCACCGCGCACCGTGCCGTGTGCCGTTCGGTCGTCCCGCT 10726 37 97.3 35 A.................................... CTCGTCACGTTGTTCGCCGCACGCGTCACCCCGGG 10654 37 100.0 36 ..................................... ATGCTGGGGCGCGGACGCCACGGTGGTGAGGGTCGC 10581 37 100.0 36 ..................................... CTCGAGGTCGAGCTGCGAGATGAGCAGGGTGCGCCA 10508 37 97.3 37 ....................................A CCGGCCAGCACCACGGCGCCGCGCTCGGTCTCGGCGA 10434 37 100.0 38 ..................................... CCACTCCTCTCCCCCCTGCCTGAGTCTACCCATGTTAC 10359 37 100.0 36 ..................................... GAGCTGGTGTTTCGTCTCGCCCAGCCGGGGGGCCGG 10286 37 100.0 37 ..................................... ACTGGTGGTGGTTGGGCGGGATGCGCGACTTCCACCA 10212 37 100.0 37 ..................................... ACGCCGTGTTCGGCGGCGAGGTCGAGGACGAGCAGAA 10138 37 100.0 37 ..................................... ACGACCAGGTCGTTCCCCGCTCCCGCTGGAAGCGGGC 10064 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================================ ================== 12 37 97.3 39 CTTTCAGTCCCCTATCGCTCGGGGAAATCATTGAAAC # Left flank : ACCGCGCCGCCTACATCGTGTGCGACGAGGACTGCGCCCCGCACCTGGCCGCCCATATCGCCCACTGCTCGCGCCCCCCACAACCCGCCGTGCGGCTGCGCGACCCCGCCGTGGCCCTGGGCATGGTCGCCGAGGGGCACGGGTTCACCATCCTCTCGCGCCTCGTGGTGACGCCGCTGCCTCCGGGCGTCCGCGTCCAGCCCCTCCCCACGCCGCTGTGGCGCACCATCGGAGCCGTCATGACGCCGGGGGGGGCGGCCCACCCGCTGGTGGAGGCGTTTCGGCGTGTGGCCCTGTCACCGGTGGTCCTGCGGACACATGCGGGGGAGGCGGCGGCGCTGCTGCGCTTCCCGAACGCGGAAGGCTGAGCCCCCAACGAGAACTGCACCCACGGGTCGCGCCCCTCCCAATCGCGGTCCAGAGAGTGGCGCACGTCAGGAATGAGCGGTCACCTCCGTTGAAACGACGCGGACACGCCCGTTTCACCCGCCACAAACGCC # Right flank : GGCTTATTTCGCGAGGCTGGGCCGTTTGTCATCTCTGTTGTCATGGGGCGCGCGGCGCGGTGGCTGCGGCATTTAGCATAGTTCATCGGGCGGCTTCGCAAACCGCGACCCCCGGCCGTGGTCCTCGCCATTTGCGGGCCGCTCCCCACGCTGTTTCCACCTCCGGGCGGCGCCCCCACGTCAGCCACCGCCCGCAAGTTGCCCGAACGCGCGTCCTGCACGGCTCGCAGATGACCGCTGCCCGGAAGCAGGCCAGCCTCTTGCGGCGTCACAGCGTATCCCCGCAGAAGTTTCGCAGCTCGCATTCCAGGCACTTGGTCGCCTGAGGGGTGGGCGGCGGGCAGCGTTCGGCCAGGATGAAGCCGCGCAATGTCTCGATGGCGGCCCGCGTGCGGTTTCGCAGCCGGGTGTCGAAGGGGATGGTGTGGGTCTGGCGGGTGCGGCTGCTGTGCCAGTAGCCGTGGGGGCAGCTCAGGTGCAGTTCGGCCTCGACCAGCAGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTCCCCTATCGCTCGGGGAAATCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 4-182 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFAG01000009.1 Deinococcus aerius strain TR0125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 4 37 100.0 33 ..................................... ACCAGGGCAAACCGAAACTTGAGCGTGTGCGTT 74 37 100.0 35 ..................................... ACAAGCGCATAAAGCAGAGACACGGCAACCAAACC 146 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 34 GTTGCAGCCTGCCTTCGGGTGGGCTGAGGATTGAAAC # Left flank : CAAG # Right flank : CGGGCCCATCAAGGTGTACAAGAGCATCCACCACGGTTGCAGCTCCTTTGCAGGAATGGGCCAAATCCTTTACCCCTCCAGCCGCACCTCGGCCACCTTCGCCAGCATGCGGAAGGACGCGAAGAGGTGCAGGGCGTCGGGACTCGTGTAGGCGACCGTCACCCCGTCCACCCGCTCCACGCCGGGCACCCGCTCGCACTGGTCGGCGCGGGCCTGGTGGTTGAAGCTCAGCTCGACCCGGGCGGGCCACGTCGTCTTGTAGGGCTTGCCCTCCGGGGCGGCCCGCACCGCCCGTTCCGCTCCCTCCCGAATCAGGCGCCTCGCCTCACGCGGGTGCAGATGCGCGGCGGCGAAGCTGCTCAGCCCCTCCTTGACCGCCACGCGCACGACCCCTTCCCCCAGCTCGTCCCCGATCTCGGCCATCGCCACGTCGTCCCCGGCGGCGAAGACGACCGGCACGCCGTAGTGCCCGGCGACGAGGGCGTTCAGGCCGTACTCGC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTGCCTTCGGGTGGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA //