Array 1 97894-99874 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYA01000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM1242 BCW_7507_1__paired__contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97894 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97955 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98016 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98077 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98138 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98199 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98260 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98321 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98382 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98443 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98504 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98565 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98626 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98687 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98748 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98809 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98870 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98931 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98992 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99053 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99114 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99175 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99236 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99297 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99359 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99420 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99481 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99542 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99603 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99664 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99725 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99786 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99847 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116007-117483 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYA01000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM1242 BCW_7507_1__paired__contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116007 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116068 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116129 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116190 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116252 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116313 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116374 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116435 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116496 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116557 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116618 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116679 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116740 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116801 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116862 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116923 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116985 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117088 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117149 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117210 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117271 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117332 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117393 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117454 29 96.6 0 A............................ | A [117480] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //