Array 1 311585-310641 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGV01000002.1 Aerococcus urinae strain UMB0072 ERR1203661.17957_1_73.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 311584 29 100.0 32 ............................. ATATTTGTTCACAACCAGCGTCCTGAAAAGGG 311523 29 100.0 32 ............................. AAGCCCCTCTGAGAGCTTGTCAAAGCCTTTCT 311462 29 96.6 32 ............................A GCGACTTTGAAAACAATTAAAGAACGATCTGA 311401 29 100.0 32 ............................. AAGGCCTTGTGGACAAGAGAAGAATCAGTTAG 311340 29 100.0 32 ............................. AAAGACCACTAGGGCAATTCCTACCCTTTGCC 311279 29 100.0 32 ............................. CAATCTCTTGCATGATCGTATAGGTAGTCCAA 311218 29 96.6 32 ............................C AAAAGCGGCAATAAATTTCTCCCAATCATCTA 311157 29 100.0 32 ............................. GACAGGATCGCTGCCAAAGCTTCACAAAATAC 311096 29 100.0 32 ............................. TCATCAAAAACTCTCTCTGACTTTTAAATTTT 311035 29 100.0 32 ............................. TTTGTTAACCTCAACAAAATTGGGCTTAGGCA 310974 29 100.0 32 ............................. ACTGACTCTATGCACGACTGGCTTGAAAGAAA 310913 29 100.0 32 ............................. GAAAAAGGACTCCGGCGTTAATAACATTTTTA 310852 29 100.0 32 ............................. TTTTAGCGATCCAGTTAGCCCCTCCAATGATC 310791 29 100.0 32 ............................. AAAAGGAAAAATCACCTTGTTATAACTAATAA 310730 29 100.0 32 ............................. GGGCCGGCAGTACAGGATCACTATTGATTTCT 310669 29 75.9 0 ....................T.AA.ATTA | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : ATGAAAGATTCGATTATCGAAGTTGGAGCACTTGCTATAAAAAATGGAGAAATTGTTAAAGAATTTGAATGTCTTATAAATTATGAGGGGATTTTATCTAATGAAATCATTTCGTTAACAGGCATTGATGATCAACTATTGAAAAAAGAAGGCCAGGACTTAGAAAAGGTTCTGCAAGATTTTAAAACCTTTATTGGTGAGGAAGATCTTGTTGGCTATAATATCTCCTTTGATATAAAATTTATTAATTATTATTTAAAGAAGCTAAATCTGCCAAAATTAAATAATAAAAGTGTTGATTTAATGAATTTCGTAAAAAAAGAAAAATTGTTTTTACCTAATTATAAATTAGAATCAGCCTTGTCAGCTTATGATATTGACGAAGAAGTTCCTCATAGAGCTTTAGGTGATGTGCATTTGATCTATCGGTTATCGTTGAAAGTAAATAAATTTATAAAATTTATGAATCGAAAAACGCATAATTAAAGGGATCCTTTAGT # Right flank : ATGTGATTGAGTTACTGTGCAATTTATTATTTGAATCATCGATACAAATGCTATCGTCCTTTTTGATGTATAATCAGCTTGAAACTTACAGTGTAAGAAAGGAGCAAACTATGAAGAGATCTTATCCGGCCCTTTTCTATTTTGATAAAGAATTTGACGGCTATTACATAGCATTTCCTGATCTGGACAACGGCGCTACTCAAGGAGAAAATATTTCTGATGCTTTATATATGGCCTCTGAATATTTAGGCCTTGTTTTAGCGGATGCGCTCGAAAGTAACGAAGAGATCCCTCAGCCGTCCAATATTAATGATTTATCTTTGATTGAAAATTATCCCTATAAAGAGGATAGTAATTGGACGGACGACTATGATATGGAAAGATCATTTATATCGATGGTGATGACGGATGTTTCTGAGTATTTAAATCTTGATGATTTAGTTGATATCAGCCTAAGTATCCCTCGATGGGCTGAAAGTTTAGCAGAGGGGGATGGATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 330576-330121 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGV01000002.1 Aerococcus urinae strain UMB0072 ERR1203661.17957_1_73.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 330575 28 100.0 33 ............................ TATTAGAAAGGAATTAAGGAATGACACCAGGAG 330514 28 100.0 33 ............................ TATATGGTGACGATGTATTAGTTTTCAGTAAAG 330453 28 100.0 33 ............................ CAGACCTGTCTAGCTTTAATTAGTGAGTTGATC 330392 28 100.0 33 ............................ CTATGAAACATGGAACGTTATGATGTGGATTTA 330331 28 100.0 33 ............................ TAAAATGCCTAGAAGTAAAGATTTAAAAGATTT 330270 28 100.0 33 ............................ TCGTCAATGTCGTTTGGCTCATCAGCAATAAAG 330209 28 100.0 33 ............................ CTGATGTATATAACAATGAAACCACAATTCCTA 330148 28 89.3 0 ........................G.AA | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 33 CTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : ACAAATTGCTATGTGTTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACATGATCTCTGTGTTTACTGGAAGGTTGGCCGTGGTAATCTGATCAAATTACAAATTTACCGGATTATTGAGTCAGCGTATGACTTTGGCCGGCGTGACAATGCCTTATTATGTCCGTACTGTCAGGAACAGCTGGGCTCCTTGAGTGAACATAAGGGCCGGCCGTGTTATTTCTTGCATCGGGGGCGAGTACAGACCAAACGTTTGCAGCGTTATAAATGCTAGCCAAAACTGTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTAGGAATTACAAAGCTTGAAGTTATAGGGATCTTTTAGT # Right flank : TCGAAATGGTGCTTTACTTACAAGCGTATTATATGATGATAGAAAGTAGGTAAGAATTAATGACAGAAGATAAGAAAAGACCTCGTGGCCGCCCAGCAACAGGGCGGAAGCGCTATAAAACTTTGAATATGAAATTCACGGAAGAAGAAAGAATGTACTTAAAAAATCAAGCAAAAATACATGATCTTACCTTATCTGACTATTTTCTAACAATAGCCAAGGAATATGAAAAGAAGCATTAGCTGTTAGATTTTTCCGCGCTTATTTGGAAATTGATAAAATTTGATTCAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGGCTTGATCATTTTTTCTTTTGAAATCTTCAGCTCCAATTATCCAAGCTTAGTAATGAACATGCTATAATATAAAAGTAAAATAAGTTTATCATCCTTTCCTGTGCTAGGGAGGAGATTTAAAGCAAATAGGCATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //