Array 1 888425-890110 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038809.1 Streptococcus agalactiae strain SS1168 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 888425 36 100.0 30 .................................... TACTCTCATATACAGCAATGAGGCGCTTTT 888491 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 888557 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTGATGATGG 888623 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 888689 36 100.0 30 .................................... TAAAAGTAATGCTGAGCTTAAAAACGAGTT 888755 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 888821 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 888887 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 888953 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 889019 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 889085 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 889151 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 889217 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 889283 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 889349 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 889415 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 889481 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 889547 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 889613 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 889679 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 889745 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 889811 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 889877 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 889943 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 890009 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 890075 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //