Array 1 9938-8688 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMH02000050.1 Leptospira noguchii str. 2007001578 ctg7180000016288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 9937 37 100.0 35 ..................................... TCCAAAAGGACGGGTGATGATCTCGGTCGGAGAAG 9865 37 100.0 34 ..................................... TCTGCCTGGGCCATCGCATCGAGCGTCGCCTGAA 9794 37 100.0 34 ..................................... GAGAATACATGTGCACCTTTGAGCAATTGGACAT 9723 37 100.0 36 ..................................... CATTTTAATGTATTTCCGTTTTCATCCGTGTTTCTA 9650 37 100.0 34 ..................................... CACTTGGCTATAATCTGATCCACTGACTGATTCT 9579 37 100.0 34 ..................................... GCCCGTGTCGAAAGTCAGTACTCGTGGCATCGTA 9508 37 100.0 33 ..................................... TTCAAATCGGAACTGCTTCGAGTGGTCTCATCT 9438 37 100.0 33 ..................................... TTTTCTGCTTTGGTTTTTATAAGACTCTGTGCT 9368 37 100.0 35 ..................................... ACTGAATTTATAGCGATGAAAAAGTATTCCCCCTT 9296 37 100.0 35 ..................................... ATATTTTTGTCGCAATTCTAATGGAAGCTGTCGTC 9224 37 100.0 36 ..................................... AAGGATACAGCAATATCACACTGTGTTGCCTCTCAG 9151 37 100.0 34 ..................................... GAACCACTCCCGCGCTTTGTTTGAAAGTTCGTAG 9080 37 100.0 33 ..................................... TTGGATGGCTTTATCTCAGTTTCGCATTGCTTT 9010 37 100.0 34 ..................................... CACTCCGTGATCCCGCATTGAGTTGATTTTATGA 8939 37 100.0 34 ..................................... AGAAGCGCTTTGATTTTGACCTAGGGATCGAAGT 8868 37 100.0 36 ..................................... GTCTTAATTCCTTGGCTTTTAATCGGAGGGACTATT 8795 37 100.0 34 ..................................... CGGAAAACCCTGAATATAAATAGTTAACGGAATA 8724 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== ==================================== ================== 18 37 99.8 34 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : TAAGCCATAATTTCTGAAATACACAATCGATTAGAGCTTCTATATTTTTACAATATTCCATCATTTGCTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCGCCAAAATTCTGAACGCTCTGATTCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTTCAGCGTCTGGACAATCATCTCAACAAGAATAAATAGATTTTTGAATGGAATTTAAGTTAAATTTCAAAATTAATCTTTTTAGTCACACAAACTTAACAATTCGGAATTCAATTTTCTTGACTTTAAACAGTAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAACTTTTTCTAATACATCTATTAGGGCCTTTATAGCCGCT # Right flank : ATTGAAAACATCTTCGAAAAACGTTGAACACGACTTAAGTAGTCCCTGAAAAAGTGTTCAAAAGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAATCACCGTAAAGCATCAAGAAGCCACGTAAAAGTCGGTAAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGAAACAGATTAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTTTGAAAGTATTACACAGAGAAGATGGGAGACCGGGCTTACAAATACAATTGTTAGTTAGACTTCACTACTTAGAAAACGTGTATAACGTATATGATGAGAAGGTGATTTAAAAAATCCGTATTAGCAACATTTCAAGTGGCTAGGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCTCTCTAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 14186-13152 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMH02000142.1 Leptospira noguchii str. 2007001578 ctg7180000016330, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 14185 37 100.0 33 ..................................... TTCGATGTTTTTTGCAACATCAAATAGATCCGA 14115 37 100.0 35 ..................................... CTCAAATGAATTCATTTTTTTTAACCTTATAAGTT 14043 37 100.0 34 ..................................... TTCATCCATTGGATCGGATTCTTTTAATCGCCTC 13972 37 100.0 34 ..................................... AATAGGTTTCTGCCCGGTGCGGTCCTGCATGCAT 13901 37 100.0 33 ..................................... TTTTCATCATTTCTTTCCCGAAAATTTCCCAAA 13831 37 100.0 34 ..................................... TTGTTTTGGGATTTTTTTTCGTCTGGACGTTCTC 13760 37 100.0 36 ..................................... ATTTTGTAAGTAGAAAGGAAGTGAGATGAAGTTATC 13687 37 100.0 34 ..................................... TATATCAATAGACAAGTTTCCGTGTTTTGTTTTT 13616 37 100.0 36 ..................................... ATTTTGTAAGTAGAAAGGAAGTGAGATGAAGTTATC 13543 37 100.0 34 ..................................... TATATCAATAGACAAGTTTCCGTGTTTTGTTTTT 13472 37 100.0 34 ..................................... ACCTACACAGTTAGGTGCAATAGTAGTATAGGAC 13401 37 100.0 34 ..................................... TTTGGCCCAGAACTTGTGCCGACTAAATATCTTC 13330 37 100.0 35 ..................................... TCTGATTGTGGCTCGGTTGTCTCAGCCTTCTCCTC 13258 37 100.0 33 ..................................... CTCCGCAAAATCCAAGAAGAAATTGAAGATAAT 13188 37 97.3 0 ....................A................ | ========== ====== ====== ====== ===================================== ==================================== ================== 15 37 99.8 34 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : GAAACTAAAGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGGACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTTATAATCTAAATCAAAAAACTTTTTCAATCAACCATTTCCATATAGCAGAAACTGATGGAAAATTAATTTTCAATAAATCTAATGTTTTTAAAATAAATCTAATTTCAAAATTAGCAAAATCCAGAACACAAACGTTTCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATTTTCTACTTTTTTAATCTATTATTGACCCCAGAAAGACGATTATTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAAAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : GATTACTTATATAGTTTCCTTGGATTCAGTCGGATTGTGAAGTTTATAGATTTTTAAATTGCATTCTTACTGTTCAATTCAGTGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTTCTGGTTTCATTTTCACCGGGTTTTTCGATGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAACGTGAGTTCGACGTAAGAAAATTGGGGCGAATAATAAACTCAATGCAACGACTCCCTATGGGTCGTCGTCGCAGCTCGCAAATTTCATAGTTAAAATGGCTCACGACCCGTCGAGCGACCCTAGAAGCGAGACGCTGAGTTTCAAACGCTTTCGTAAAAAGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 15897-15074 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMH02000008.1 Leptospira noguchii str. 2007001578 ctg7180000016333, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15896 29 100.0 32 ............................. ACCTTCTGAGTAATTTATTTCCTAGAATCCCA 15835 29 100.0 32 ............................. TGATTCTCACAAGTTTCCAGATTTTTTAAAAC 15774 29 100.0 32 ............................. GAACCTGGATACGGGTAGAGTTAGAATTTAAA 15713 29 100.0 32 ............................. ACAATGTGGAATGGTTAACCAAACATATTACA 15652 29 100.0 32 ............................. AATTCCGCAGGTATTTAGTAGCGATTTTGTCG 15591 29 100.0 32 ............................. TGTTATCGCAAGTTGGGGGGAAAGAATAATAG 15530 29 100.0 32 ............................. CGGTTGGAACCAAACAGATCCTGGAATTGTAA 15469 29 100.0 32 ............................. CAAGAATCGAAAATGAATCGTCAGTCGTTAGT C [15454] 15407 29 100.0 32 ............................. AGAACCCGAACTGATAACGTTCAACAATCCGA 15346 29 100.0 32 ............................. ACGTTATTGAGTCTTTATCATCGTCTAAAGAC 15285 29 100.0 32 ............................. CCGCTTGCAGCTGGGCAAGGCTGGGCAATCTA 15224 29 100.0 32 ............................. GTATATGAGAAATTATATGAATACGGAATTCA 15163 29 100.0 32 ............................. GTTACAGAATGGCGTTATGATTATGTAGATTT 15102 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTATATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATTAGATCTACTATACAAATTCTTAGA # Right flank : AGATTTAACTAATATGAGTTCGGTCTAAGGAGAGATTAAAAGTTGTAAATTGTCTTTAGATCTCAAATTCAAAGACGGTTTTTTTGGAAAGAATGAAAATGCAACTAAACCACTTAAAAGATTAACAGCCCAATTGCAAAAGCTGCGATGTCTAGTATGTTGAATCTGGCATATATTTTTAAGTTCATCGTTAACCGATTCAATGATAGCTCTTTTTCTTAAAAGAATTTTGTCGACTAAGAGCCGGTCTCAAAACTATCTATTAAAGAAATTGAAAACAATAATAGTGCTGGCGAGGTAAAGAGAAGCCATATAATTTTCCGATTTCTTTCCCTAACGGATAAGGATAGCTCTGAATCGATTGTGCCAACTGTTCGTCCTTTCAACGACCCATCTTCGAGGCTTTCCATTATATTTACCGATCAATGGTTTCTCGCCTCTTCTTCGAATGTGAGGCCTGATATTTCTTCTTCTAATTAATTTTTCCGTATCTTTGAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10754-10222 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMH02000089.1 Leptospira noguchii str. 2007001578 ctg7180000016267, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 10753 37 100.0 33 ..................................... ATATTCAAAATAAATTAGGTTATAATACGTATG 10683 37 100.0 35 ..................................... CTATTTCAAAATTCCCGTATTGATAATGTCCTAAT 10611 37 100.0 36 ..................................... ACTGATCCCGTCTTTCGGAAACTTGGAGTAATACTT 10538 37 100.0 34 ..................................... ATTTTCCTGGCAATCATAGTACGAGTGATTTTGG 10467 37 100.0 34 ..................................... CTTTTTGAAGTTCTCTGATTTGAGGCATTATCAA 10396 37 100.0 33 ..................................... CGGTTCCGGGTCTTCGTTTAACAGTGTAGCAAA 10326 37 100.0 33 ..................................... TAAGTAACTCCAAGAGTCCGCCCGTGCTTTTTC 10256 35 86.5 0 .......A...A....A....--.............. | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 98.3 34 GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Left flank : CCGCCGTTTGTCGATTGAACAGTTTTGCTTAACGTTTATGGCTCCTCCGGTAATATCATGGATAAAGGCGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGTATGATCTTTACGAGGACATCGTTTACCACAGTCCGGGCACTCTACCATTTCTTTCTCATCGTATACGACTTCGATATCTACCCTCTTAGTTGTTACATTTAATTCAACGCTTTCAACAGACCACGGTGATAAAATTCCTAAAAGAAGCGAATAATGGGCTTCTAACTTTTCGTTTGGGTTCATTAGAAATATTATTCATTTATTATATTTTACTTTTTCAATGAATAATTTTTACAGACAATTCATTTCTCATATTACCGTCGTTTATGTAGTAGTTCTTTCCCATGATATTACCGGAGGAGCCACGTTTTCAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAGCTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : TTTGTTTGAGATGAGTTTCATTTAAAATTTTCAGAATTTATCTGTAAAAATCATGGCTTACTTTAATCCTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAATATATAATTGATTACAAACCATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAGAGTATTTTCGAGATAACTTTTATCGATCCCTACAAAATCAAGTACCTAAAGTTATGATAAAGTGTCGGTTAACGTGTTTTCGGGATAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTCCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTATAGAGTAGTATTTCTATAAATTCTGTAGACTACAGAATTTATATTGATTTTGAGAATTTAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 19482-19224 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMH02000088.1 Leptospira noguchii str. 2007001578 ctg7180000016280, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 19481 36 100.0 34 .................................... CAAAAATAAGTAACCCTTTAACTCAAGATGATGT 19411 36 100.0 36 .................................... TCAACGAGATCATAAATTACATCAATTGAACGTTTC 19339 36 100.0 44 .................................... ACGACTTACCTTGAGACGCGGCGATGTCCCCAAGTCTCTTCATA 19259 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 4 36 100.0 38 TTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : GCTTTTCGAATTTTTTACTATTTTTAGATTCAATAAGGATTTGAATAATTTTCACTTTTAAAAATGCAAGATGAAACGCCGTTCTTGTAAGAGACATACGATCTAATTCTTCCGAAAAAAATATTTCAATTTCTTCTAAAATATTTGGGGTTTGAATGAGATCATCGTTAAAAAAAGATCGCTGTGTTAAAAAATCATATTTTAAAACACCGGTTCTTAGTCGATTCAGCTCGGTATAAGAGTTGATCAATCTCCAACCGCAAAAAATTCTGCAGACGGTAAAAGTTGTATGTTTTAACCTTTTCTTTCTCATAATAAAAATCTTACAAAGTTACTACATTGAAAGTGAAAATCCAATGATTCTAAAACAAATTTCATCATCAATTATAATCACCTAACTATAATTTTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAAGCTAATAAAGATTTTTCTAATGTATAAATTAGTATCTTTGTGGCCGCT # Right flank : TTAGGCGCTGGACCTTGTTTTAGATTTTTGTTAGACATTTCTTTCTCTTATCAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTGAAAAAAGTGTGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTGAATATACAAAATCTATCGTTCAACTTTATAGTAAAATACAATTATGAGGCGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCGGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTCTCGGAGAATGTTTTAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCGAGTAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 32904-33294 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMH02000069.1 Leptospira noguchii str. 2007001578 ctg7180000016368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 32904 37 100.0 34 ..................................... TGCTTCTTTCAGGGTTTCGTTGTAGAGGGCCTGA 32975 37 100.0 34 ..................................... TTTTTCAGGCATTTCGGGGAACGCCTTGCTTACG 33046 37 100.0 33 ..................................... TTGTTCCTCTGCTCCATCCCCGCATTCCGAAGC 33116 37 100.0 34 ..................................... GTTTTTGACTGGGTTTCCGTTGCAACCTTTAGAA 33187 37 100.0 34 ..................................... TTTTTGCGCTTAATTAAATACCGGATCTCACAAT 33258 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 6 37 100.0 34 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : AGAAAATTATTCTGAAAAACAAAAAGATACTTTCAATTCTCTTAAAGTAAATCTGTATAAAGTTGGCAGGGGATGGCAGATCAAAGAGGCCTTTAAGAAGTTTTGGTCTTTCAGTTATAAAGGTAACGCGGAAAAGTTTTTCAAACGTTGGTATTTTTGGGCTACTCATTCTAAACTTAAACCGATCATCAAAGTGGCCAAAATGCTTAAGAGAAATCTTAAATACATCCTTACTTATTTCTCTCATCGTATTACAAACGCCGGTTCGGAAAGTATGAATTCAAGAATTCAAAAAATTAAATCGAATGCAAGAGGCTTTAGAAACTTCCAATTCTTTCGTATCTCTATTCTCTTTCATTTAGGCGGTTTGAACCTTTATCCATGATATTACCGGAGGAGCCACGTTTATTCAGTATGGCACATACAGACTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : CAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATACGATGTAATCAATGTAAAAACAATTGAGGCGAGAAACTTAGTGTTTCATAGATAGGATTTGAGTTTAGATCACGCTCTAAACTCAAAATCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTGAATTTCAAATGAAAGTATGGAATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAATTTTTAGATACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATCATTTTTCCTCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //