Array 1 136489-138347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHOX010000001.1 Aerococcus urinae isolate Au-15-B94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136489 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 136550 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 136611 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 136672 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 136733 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 136794 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 136855 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 136916 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 136977 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 137038 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 137099 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 137160 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 137221 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 137282 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 137343 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 137404 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 137465 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 137526 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 137587 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 137648 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 137709 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 137771 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 137832 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 137893 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 137954 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 138015 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 138076 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 138137 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 138198 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 138258 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 138319 28 75.9 0 ......-....C.......T.T.A...TG | A [138337] ========== ====== ====== ====== ============================= ================================= ================== 31 29 97.7 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 157297-158116 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHOX010000001.1 Aerococcus urinae isolate Au-15-B94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 157297 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 157358 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 157419 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 157480 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 157541 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 157602 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 157663 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 157724 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 157786 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 157847 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 157908 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 157969 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 158030 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 158090 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //