Array 1 153105-153779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMUI010000011.1 Marinomonas spartinae strain USM8 Marinomonas_USM8_unicycler_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 153105 35 100.0 37 ................................... TTAACACTTTCTCCGCCACATCCAGAGCTTGCTTTAC 153177 35 100.0 37 ................................... TTAACACTTTCTCCGCCACATCCAGAGCTTGCTTTAC 153249 35 100.0 36 ................................... AGTCGCGCCCTTTTTCAAAAACAACTGGTTTAAGGC 153320 35 100.0 35 ................................... TCTACTTTAGATTGAGATTCAAGGTTGTTCCAAAT 153390 35 100.0 35 ................................... GCAAGGATAATTTCAATTATGTGTTGGCGTAAAAT 153460 35 100.0 37 ................................... GCATTAATTGAGGTTTTTTGTGATAGGGCCTCTTCAA 153532 35 100.0 38 ................................... ACCACTTGAAATAATTCTAAGGTATACGCCGTCCTCAG 153605 35 100.0 36 ................................... TTGTTAGTCGTTCCGCCGTCGCTGAAAAAGCTTTGA 153676 35 100.0 34 ................................... ATAGCTTTTCCACTTTGAGAGAAGTAAACATTTC 153745 35 97.1 0 ..............................A.... | ========== ====== ====== ====== =================================== ====================================== ================== 10 35 99.7 36 CCCTCAGAGTGATTGGCCGCTTAGGCCGTTGAGAC # Left flank : CAGAAACCCATAATAAAACTACCTCAAACCAATGGGTTTTTGTCTCTGCATTTAATCTGTAAGAGGAGGAGCTGGACATTTAATTTCCTTTTAATAATATGGGAAGACCCTACCGATAAATTAAGGCCGCTATTCTAAAACAAAAAACAACAAAGGAGACCTGATATTCCTAATAAATAGAAAAAAGGTCGATACTTAGCTCTAGGCGTAAAAAAAGCAAATCAGTAGAGGGAACAAGATTCACCCCTACTTCCTCCGCCCTTGCAGTATAAAAACGCTCTTTCTGTGGATAACTACCAAATGTTCTTTAACAACAACCTGTTAAAACCAGCCCTTTAGATATTTTTAATCAATAGGGCGGGAATAGATGAAAAATCAATAAGTTAGCTTGATTTTTTATGTCTTTTTCGCTATTTTTAAAGAACTCACTTGTGAATAACTTGAGGGCGGGGGAAATCAGCTTTTAACTGTTTGAAATAATTAAGAAAAAAGAGGGTACT # Right flank : CGAAATGGGCCAGTGGCTTGAAACACTGTCGCCCCCCCCTCAGAGTGATTGGCCGTTGAGACTCAAACTTTGCTTTAGCTATGCGTGCTAATGCACGCCATCAGAGTGATTGACTCTTTCCCTACCATCTCGCCTCTAATACTCCTCAGAGCAACTAGCGACTAATCGAAAAATAAAACGGCTTAATAAATTCATCGCCTCTATTCAGAGATGACCTATGTAATAAAAGTCGATAGTATTTATTACACGATGAGCAGCTTGCTCCGATGAAGCATCAAACTTATTCAACTTTTACTTCATAATGCTAAGGAAGCATATTATGAACAAGCAAAAATACGCTACCGTGACACAGCCGCCACCTGAAACTCAAAATTTAGGTGCCTTATTAAACGCCTTTATGGGGTTTGCTGGCATCACTAAAGATACCTACTCTGAAATAACAGAAGAGTTAACCAAAGGGGTTTATAGACATACCGCCATTTCATCTGACAGTCTTAAAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAGAGTGATTGGCCGCTTAGGCCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 44823-46040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMUI010000029.1 Marinomonas spartinae strain USM8 Marinomonas_USM8_unicycler_contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 44823 35 94.3 34 A...T.............................. GTGATGGTTCTGACGAATCTGAAGGCGATCAAAA 44892 35 97.1 34 ................T.................. CAGACAATGTAATTTCTAAGGCAATTGCCTTAGG 44961 35 100.0 37 ................................... GCCGAGCGATTGCGTTCACGAGTACCGGAAAGATATT 45033 35 100.0 36 ................................... AGCGCAACTGACTTTAGCTGGCTTATGAACTGTGCC 45104 35 100.0 35 ................................... TAAAAACCTTAGAGTTGAACTTTTAAAGCTCAACT 45174 35 100.0 34 ................................... ATTTTGATCAAATCGATGTTTCGAGAGTTTCATA 45243 35 100.0 36 ................................... AAACTTGGATCAAAACGGCTCTTTTGGAATATTCCA 45314 35 100.0 34 ................................... AAGCTTATTCTGCATTGGAGGCTTCTAGCTTTAA 45383 35 100.0 35 ................................... CCTCGCGGAAGTGAAAAAAGATATCGGCAAGTTTA 45453 35 100.0 38 ................................... TGTCAGCAAGTGGGTTAACAAGAATATCATCGAGTCCA 45526 35 100.0 33 ................................... TCTGCCAGGGGTTAATGGAGGCAGCGTTGCTGA 45594 35 100.0 34 ................................... TTTCAAGTAATGGCTTGGGTCAATTGGCCCAATC 45663 35 100.0 35 ................................... ATGGAAAGACTAGAAAAAACCGCTAAAAATCTTAA 45733 35 100.0 34 ................................... ATTCAAAAGTGAACCTTGGTGCTGATGGCACCTT 45802 35 100.0 35 ................................... GGAAGGCTCAGAGCTTGTTGGCTTAGACCAACAAT 45872 35 100.0 36 ................................... GCAGAAATCTGCATCATCAGTCGCCAACAAGATGGC 45943 35 100.0 27 ................................... GAATCCATCCTGGTATAGACGACAAAG Deletion [46005] 46005 35 82.9 0 .CAA......T..C.A................... | A [46014] ========== ====== ====== ====== =================================== ====================================== ================== 18 35 98.6 35 GTCTCAACGGCCTAAGCGGCCAATCTCTCTGAGGG # Left flank : TACCTTTCTTACCAAGGGGTGCCAGCCAATGCCATCCTGTCAGGACGCTTTTTATCCGGTTTGTGTGTACTGGTGCCTTTAGCCATGATGATGCCGTCTAGCCTAGTGGCCATGCCCATGACGAAAGTCGGGCTTGTCGTGGTGATGGCATTACTCAGTGGTCTGATTGGTATGTGGTTTTATTATCAGGGATTAAAATCCGTCCCCGCGCAATTTGCTACCTTGGCAGAAATGTCGTTTCCTGTGTTTGCGGCAGGTATTAACTGGTTGTTTTTAGATATGAGCTTAACCAGCTACCAGATTATTGGGGCGATCATGTTAATTTTGGGGAATGTGGGCTTGCGAATGAAAGAGCTAAGAACAGCAGAGCTAAGGCCAGCGATTCAATAATCACTGCATCGTCTTTCTAAAAGGTCTGATTACTTAGGTATCAGGCCTTTTTTTAATTCTAAAAAAGCGGCTAGAAGTTCAAAAGAACTCCAAGCCGCAATAGATAAAAT # Right flank : GAGTGCCCTCTTTTTTCTTAACGATTTCAATCAGTTATAAGCTGATTTTCCCCGCCCTCAAGTTATGCACAAGAGGGTTCCTTAAAAATAGCGAAAAAGGCATAAAAAATCAAGCTAACTTATTGATTTTTCATCTATTCCCGCCCTGTTGGCTATAAACCTTTAGAAGACTAATTCTAATTGCTTGTTGTTAAAGAGCATTTAGTGGTTATCCACAAAAATAACGTTTTTATAATACAAGGGCGGCAGGGAAGCTGGCAATAGGGTTTCCCCAAACATCATGACTTTGCTGCCGTGACTCTCTATTTAACCAATAGAAGCGTACGCTATCATTTTCTTCGGCATATTGCGTGCATTTTTGACGTAAACGTTCGAGGTCATCTTTGTCCTTAACACTGATTTCGAATACCGAATATTGCACACGGTCACCATAGGTTAGTAATAACTCAGATAGTTTGCGACGATTTTTATCGTCCTCAATGTCGAAGCAAGCCAAATAG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAACGGCCTAAGCGGCCAATCTCTCTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 77933-77785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMUI010000014.1 Marinomonas spartinae strain USM8 Marinomonas_USM8_unicycler_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77932 28 96.4 32 ...G........................ ATATTCTCATAGTTTCGATATGACGTTTAGAT 77872 28 96.4 32 ...A........................ TGAGATAATTTGTGAGCAATACTACTATTTTC 77812 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 CTTCACCGCCGAACAGGCGGCTTAGAAA # Left flank : ATCTTTTTAATTTTGTTTGTTAATTCCATTCTGAGAAGCTACTCCTTATTGGGTTTATGAGTTTAATTATACGATAAATACCGTTACCATGCCTTCACTATGTGTGAATGGACACGCATGTTAACCAATGGATAAGGACTATTTATGTTTAAAGAACTCGTTTTAGCTGGTGTTGCGATGATTTCTGTTAGTGCGTTTGCTGATACGTCTAGTCAAGCTAGTCATGAGCCACGCTATGATGCAAAGTCGTTTTGCACGTACGAAAATGAAGCGTATAGCATTGGTGCTAAGATTAAAGTGGATAGTGGCGATACGCTAGAGTGTTTCAAGCCTGAATGGGGGAAAAGTGGCACCGGTAATATTAAAACCGCTCACTGGGAGTAGTCTTTAAAACCGCTTGTATAAATAGGGGCTTGGCATTTCCTGTTTAAAAAAGGGTATTTTTGCTAAAAATACACAAAGCTCTTTAACAATCAAAGAGTGAATGCTACTTTTATCTA # Right flank : TAAGATCCATTAAGCTGTACTCGCTCAGTGAAAATAGCGTCTATTGGGCGCTATTTTTGCTCATCGAACTCTGTAGTGTTTTTTATGGTAAGCAAGTAGGTCATTGGATAGGTGTTTTGTTACTTTTCCCTGACTGCGTAAGGTATTTTCGTAGTTTCGAATCGTGTGATCTTTAAGTCTTCTTGACCACCATTTCACCTCACATAACATTCTTGATGCTTTAGCGCGTTGGTTATCTGCGTTTTTAGATACCGCTGTTAGCGAGCATTGGGGCGGATCAATGCCTTGTTGGGTGCAGTAATCAATACCTGCTTTTAGTCCTTTGTCATTAATCAGTTTAACGCAATTTCCTGCGTGTGTTTCTGCTGCCTTGATGGCTTCTTTTACGGCATTTTCGACGTCTTCTAATGACATGATGTCAACCTCTCCCTGTTGTTGGTGATTTGTATTATACTGTATATATATACAGTATTTTTCAAGGGCTATTTTTCTCATGAGTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGAACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //