Array 1 142999-143453 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMGU01000001.1 Aerococcus urinae strain UMB0239 NODE_1_length_750830_cov_62.4269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 142999 28 100.0 33 ............................ TATTAGAAAGGAATTAAGGAATGACACCAGGAG 143060 28 100.0 33 ............................ TATATGGTGACGATGTATTAGTTTTCAGTAAAG 143121 28 100.0 33 ............................ CAGACCTGTCTAGCTTTAATTAGTGAGTTGATC 143182 28 100.0 33 ............................ CTATGAAACATGGAACGTTATGATGTGGATTTA 143243 28 100.0 33 ............................ TAAAATGCCTAGAAGTAAAGATTTAAAAGATTT 143304 28 100.0 33 ............................ TCGTCAATGTCGTTTGGCTCATCAGCAATAAAG 143365 28 100.0 33 ............................ CTGATGTATATAACAATGAAACCACAATTCCTA 143426 28 89.3 0 ........................G.AA | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 33 CTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : ACAAATTGCTATGTGTTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACATGATCTCTGTGTTTACTGGAAGGTTGGCCGTGGTAATCTGATCAAATTACAAATTTACCGGATTATTGAGTCAGCGTATGACTTTGGCCGGCGTGACAATGCCTTATTATGTCCGTACTGTCAGGAACAGCTGGGCTCCTTGAGTGAACATAAGGGCCGGCCGTGTTATTTCTTGCATCGGGGGCGAGTACAGACCAAACGTTTGCAGCGTTATAAATGCTAGCCAAAACTGTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTAGGAATTACAAAGCTTGAAGTTATAGGGATCTTTTAGT # Right flank : ATCGAAATGGTGCTTTACTTACAAGCGTATTATATGATGATAGAAAGTAGGTAAGAATTAATGACAGAAGATAAGAAAAGACCTCGTGGCCGCCCAGCAACAGGGCGGAAGCGCTATAAAACTTTGAATATGAAATTCACGGAAGAAGAAAGAATGTACTTAAAAAATCAAGCAAAAATACATGATCTTACCTTATCTGACTATTTTCTAACAATAGCCAAGGAATATGAAAAGAAGCATTAGCTGTTAGATTTTTCCGCGCTTATTTGGAAATTGATAAAATTTGATTCAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGGCTTGATCATTTTTTCTTTTGAAATCTTCAGCTCCAATTATCCAAGCTTAGTAATGAACATGCTATAATATAAAAGTAAAATAAGTTTATCATCCTTTCCTGTGCTAGGGAGGAGATTTAAAGCAAATAGGCATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 161990-162933 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMGU01000001.1 Aerococcus urinae strain UMB0239 NODE_1_length_750830_cov_62.4269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161990 29 100.0 32 ............................. ATATTTGTTCACAACCAGCGTCCTGAAAAGGG 162051 29 100.0 32 ............................. AAGCCCCTCTGAGAGCTTGTCAAAGCCTTTCT 162112 29 96.6 32 ............................A GCGACTTTGAAAACAATTAAAGAACGATCTGA 162173 29 100.0 32 ............................. AAGGCCTTGTGGACAAGAGAAGAATCAGTTAG 162234 29 100.0 32 ............................. AAAGACCACTAGGGCAATTCCTACCCTTTGCC 162295 29 100.0 32 ............................. CAATCTCTTGCATGATCGTATAGGTAGTCCAA 162356 29 96.6 32 ............................C AAAAGCGGCAATAAATTTCTCCCAATCATCTA 162417 29 100.0 32 ............................. GACAGGATCGCTGCCAAAGCTTCACAAAATAC 162478 29 100.0 32 ............................. TCATCAAAAACTCTCTCTGACTTTTAAATTTT 162539 29 100.0 32 ............................. TTTGTTAACCTCAACAAAATTGGGCTTAGGCA 162600 29 100.0 32 ............................. ACTGACTCTATGCACGACTGGCTTGAAAGAAA 162661 29 100.0 32 ............................. GAAAAAGGACTCCGGCGTTAATAACATTTTTA 162722 29 100.0 32 ............................. TTTTAGCGATCCAGTTAGCCCCTCCAATGATC 162783 29 100.0 32 ............................. AAAAGGAAAAATCACCTTGTTATAACTAATAA 162844 29 100.0 32 ............................. GGGCCGGCAGTACAGGATCACTATTGATTTCT 162905 29 75.9 0 ....................T.AA.ATTA | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : ATGAAAGATTCGATTATCGAAGTTGGAGCACTTGCTATAAAAAATGGAGAAATTGTTAAAGAATTTGAATGTCTTATAAATTATGAGGGGATTTTATCTAATGAAATCATTTCGTTAACAGGCATTGATGATCAACTATTGAAAAAAGAAGGCCAGGACTTAGAAAAGGTTCTGCAAGATTTTAAAACCTTTATTGGTGAGGAAGATCTTGTTGGCTATAATATCTCCTTTGATATAAAATTTATTAATTATTATTTAAAGAAGCTAAATCTGCCAAAATTAAATAATAAAAGTGTTGATTTAATGAATTTCGTAAAAAAAGAAAAATTGTTTTTACCTAATTATAAATTAGAATCAGCCTTGTCAGCTTATGATATTGACGAAGAAGTTCCTCATAGAGCTTTAGGTGATGTGCATTTGATCTATCGGTTATCGTTGAAAGTAAATAAATTTATAAAATTTATGAATCGAAAAACGCATAATTAAAGGGATCCTTTAGT # Right flank : AATGTGATTGAGTTACTGTGCAATTTATTATTTGAATCATCGATACAAATGCTATCGTCCTTTTTGATGTATAATCAGCTTGAAACTTACAGTGTAAGAAAGGAGCAAACTATGAAGAGATCTTATCCGGCCCTTTTCTATTTTGATAAAGAATTTGACGGCTATTACATAGCATTTCCTGATCTGGACAACGGCGCTACTCAAGGAGAAAATATTTCTGATGCTTTATATATGGCCTCTGAATATTTAGGCCTTGTTTTAGCGGATGCGCTCGAAAGTAACGAAGAGATCCCTCAGCCGTCCAATATTAATGATTTATCTTTGATTGAAAATTATCCCTATAAAGAGGATAGTAATTGGACGGACGACTATGATATGGAAAGATCATTTATATCGATGGTGATGACGGATGTTTCTGAGTATTTAAATCTTGATGATTTAGTTGATATCAGCCTAAGTATCCCTCGATGGGCTGAAAGTTTAGCAGAGGGGGATGGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //