Array 1 10901-14438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRBH010000017.1 Streptococcus thermophilus strain Douc24 Contig_017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 10901 36 100.0 30 .................................... ATAAACTTAGAGAACTGCTCTCTGACGGCA 10967 36 100.0 30 .................................... AACCTCTGTTTGACACAGCGGTAATAGCCC 11033 36 100.0 30 .................................... CTTATTTCAAATGGAAAGACCTGAACACCT 11099 36 100.0 30 .................................... AAATAACGCTTACGCAAGTGACCCAAGGTG 11165 36 100.0 30 .................................... CTAATTTGTGGACAGACGACAACCACGAAG 11231 36 100.0 30 .................................... TCTCTTTTAACAACAGATGTTTTTTTAGGT 11297 36 100.0 30 .................................... GCTTGGCGCTGGTTTAGTGTTACTTTATAA 11363 36 100.0 30 .................................... CAACCAAAGCAAGTTTCACCAATTTCAAAC 11429 36 100.0 30 .................................... CGGTTGATAAGAGTACATCACCGCTCACCG 11495 36 100.0 30 .................................... CCTATCGACAAAATGAAAAACCCGTTCTTA 11561 36 100.0 28 .................................... ATATATAGCAAAAACAAAAAAAATGCGT 11625 36 100.0 30 .................................... TAGCTCAAGTTGCATGTGGTGTCAGACCTA 11691 36 100.0 31 .................................... CCTGTTGCAAGAGTTAATTGTTCTGATGCTG 11758 36 100.0 31 .................................... TTGGCAGCTAGCTCACTAATCAAGCCTGCTA 11825 36 100.0 30 .................................... CTCGTTAGAGAAACTTAAAGAGCTGTTGCT 11891 36 100.0 30 .................................... TACAGTAACAGTTACTTTTACTCGTAACCG 11957 36 100.0 30 .................................... AAATGTTCCTTTACCATTGTTACCGTCCCC 12023 36 100.0 30 .................................... AAAAGCTAGAAGCACTTTCCAAGGTGGCAC 12089 36 100.0 31 .................................... ACAGACTGGAATTTAAAATAAAGGTGGTGGT 12156 36 100.0 30 .................................... AGACACCTTCGCCAAAAGCTTTGCCAATTT 12222 36 100.0 30 .................................... CTCGTTAGAGAAACTTAAAGAGCTGTTGCT 12288 36 100.0 30 .................................... TTGGCAATATGCAGGAGTTGAAGGTAGTTA 12354 36 100.0 30 .................................... ATTTTACAAAGACAAAGAAAACAAAACAAC 12420 36 100.0 30 .................................... AGCTAGACATATCAGCACCCCATGACATTA 12486 36 100.0 30 .................................... GAATACAAGGCCAACATTGCCATGATTGAG 12552 36 100.0 30 .................................... CATATCCTTGACTTCCGCTTTCGCTTCTTA 12618 36 100.0 30 .................................... ATTTTTAAGGGTAGCGCCCTAAGTCTGGGT 12684 36 100.0 30 .................................... AAAGCCACTTAGAATGCCAGAATTGCCATT 12750 36 100.0 30 .................................... GGGGCTTAACACCAAGCCAGTATATAGCCC 12816 36 100.0 30 .................................... GCCACGTCTTGTCCGTTGCTACGTCTTCCA 12882 36 100.0 30 .................................... AATAGTATCAAGGGTAAATCTACCAGTCAA 12948 36 100.0 30 .................................... ATCTTCCCTAGAAATGAGTTTAGATCTTTA 13014 36 100.0 30 .................................... ATGCTTTCTTTACAGATTTTTCAATGCCGT 13080 36 100.0 30 .................................... ATGGCATAATCTTCAAACGCATACATACCA 13146 36 100.0 30 .................................... CTGAATTAGCAGAACCAAGAAGTATCTTAG 13212 36 100.0 30 .................................... CACAACACAAAAAGTTTTTGAGGTTGACAC 13278 36 100.0 30 .................................... AGGTAAAATTGCCGACAATGTTGGAACGTC 13344 36 100.0 30 .................................... CCTATGGACCAAGACAGTATGGGACTATAC 13410 36 100.0 31 .................................... CAAGAAGAAAATGATTAATTTTAAATTACGT 13477 36 100.0 30 .................................... AAGAAGAAAATGATTAATTTTAAATTACGT 13543 36 100.0 30 .................................... GAACGCTCTTTAATCACATTGTCAAACCTT 13609 36 100.0 30 .................................... TAAACGTTATTTCAAGTTTGAGAACGACTT 13675 36 100.0 30 .................................... TATTCAATTCCTTAATGAATCGGTAACCAA 13741 36 100.0 30 .................................... GGCACTCTCTTTTTGAAAATAACAATACTA 13807 36 100.0 30 .................................... AATGTAAAAGAATTGAATGGTTTTGCATCA 13873 36 100.0 30 .................................... CATGGTAATGTCACCAGACTGAAGCTTGGC 13939 36 100.0 31 .................................... AAAGTGAGCGTGTACACCGAAGACACCAGAC 14006 36 100.0 30 .................................... TGTCAGCATCAAATGATGGATTTGTAATTG 14072 36 100.0 30 .................................... TTCTAGCGCTTCATTCAATAGCTCGGTATT 14138 36 100.0 31 .................................... CTGACGCGATCAAAAACGATTGCGGAACAGC 14205 36 100.0 30 .................................... CACTAGCTACTTTCTTAGCGGCGAAGTAAG 14271 36 100.0 30 .................................... TATATAAGTGCGTGCACGAAAAGGGAATTC 14337 36 100.0 30 .................................... TGTCAGCATCAAATGATGGATTTGTAATTG 14403 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 54 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTCTAGCGCTTCATTCAATAGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 26-655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRBH010000018.1 Streptococcus thermophilus strain Douc24 Contig_018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 .................................... CACTAGCTACTTTCTTAGCGGCGAAGTAAG 92 36 100.0 30 .................................... GTTTAGTCTTGAAAGTAAGCCCAATAAGTT 158 36 100.0 30 .................................... TATTATCAACGCAAGCATTACAACAACTTC 224 36 100.0 30 .................................... ATTCAGCCTTGAAAGTGTTCCTGATAAGTT 290 36 100.0 30 .................................... GACGGCACAGCTGACTGTTCTGGTTCTATG 356 36 100.0 30 .................................... AACTTTTAAAAGGTGCTGGACAACCTTACG 422 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACTT 488 36 100.0 30 .................................... GATAAAGTAAGCTAACCATTAAGCGCAGTT 554 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 620 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : CGATCAAAAACGATTGCGGAACAGCG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //