Array 1 47629-47300 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXT01000027.1 Acinetobacter baumannii strain MCR56 NODE_34_length_52825_cov_25.083408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47628 27 85.7 32 TAA...-..................... TGCTCCTGACGAGCTAAGACGGCGCGGCCACT CC [47617] 47567 28 100.0 32 ............................ ATTGAAGAAATCAGGAAGAATGCTCCAGAGGG 47507 28 100.0 32 ............................ AAACTAAAAATACAAATCAGTTGTTTTGATAT 47447 28 100.0 32 ............................ TCATAGATAAATAGACAAAAGGGGCCGTTAAG 47387 28 100.0 32 ............................ ATTGGATGCCATTACCCAATCCACCAAAAGCA 47327 28 89.3 0 ..........A.G..............G | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGTTTCAGTCTGGACAAGTGCCGGTATTTTTAATCAGTCTGAAAGCAGGAGGGGTCGGTCTGAATCTAACTGCCGCAGATACGGTCATTCACTATGATCCATGGTGGAACCCTGCTGCTGAAGATCAAGCTTCAGATCGTGCATGGCGGATTGGACAGGACAAGCCGGTATTTGTCTATAAGCTGATTACTAATAAAAGCATAGAAGAAAAAATTCTTGCCTTACAGCAAAATAAAGCAGAACTGGCACACTCTATTCTAAGTACAGATCATGAAGGCGAAGTGAAACTGACGGAAAATGACGTGATGAACTTGTTTGAGAAATTTTAGTTTGGTTTCAGATTACCCTAATCATCTGTAAGTATCTGAAAGTCTGGATGCAATTTTTTCCAATGTTCTCTTAATTTTTCTTTATGAACAGAAATCATAGGTAAGTCTAGTAATAGCACTGGCCATACTGACCGTGCTTTGTCCATGATCGCGTGAAGTTGTTTTTCAA # Right flank : TATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGTAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAGAACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTACC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12429-7114 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXT01000019.1 Acinetobacter baumannii strain MCR56 NODE_55_length_65174_cov_23.039448, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 12428 30 93.3 30 ............................AG ACGGATTCATAACCGACACTCGCATTTTAG 12368 30 96.7 30 ............................A. ACATCTTTATCAGTATGACGAACCTTAGAC 12308 30 100.0 31 .............................. TGGCTGCAAGCGGGACCATAATCCATGCAGC 12247 30 100.0 30 .............................. TCTGGGAGATTTTGAGAGAGGGCACACTGC 12187 30 100.0 30 .............................. CAGGACATTGATCAGGTACTGATTTGATAA 12127 30 96.7 30 ............................A. TATCGCTTTCATTTTAAAGACGAATATCAA 12067 30 100.0 30 .............................. CATGAACTAATTTAAAAGCAACATTAGTAA 12007 30 96.7 30 ............................G. GCCTGTAGCAAAAGCAAAAGATTTAGCATT 11947 30 96.7 31 ............................G. AGCAGTAACCAAAAAAAACCGTTCAGGGGAA 11886 30 100.0 30 .............................. CTTAGCTGATCTGCGGATAGTTGCCACAGT 11826 30 93.3 30 ............................AG TTATAGGCATAGAGTGCATGGGGCATGTTG 11766 30 96.7 30 ............................A. AAGGAAAGGGTAGGCGTTCAGACCGTAAAG 11706 30 96.7 30 ............................G. ATGAAACTAAAAGCTATGCTCAATTAAAGA 11646 30 93.3 30 ............................AA GATCAGGGGCAACGAAAACAAGGATACCCG 11586 30 100.0 30 .............................. TACCCGATGCAGGCTGACCGCCAGTAATGA 11526 30 100.0 30 .............................. TCTTAGCAAATAAACTTGCGTAAGTTCCGT 11466 30 93.3 30 ............................AG TAAAGAACAACTTTCTTTAGAGTTGCCTAT 11406 30 100.0 30 .............................. AACTGAACTTTGCTATCAAAAAGTTTTAGT 11346 30 100.0 30 .............................. TAACTTTCAGGTCTGCCAACTCTGCTTTTC 11286 30 96.7 30 .............................A ACCCGATTAATCCCTATGACTGGCGAAAGA 11226 30 93.3 30 ............................AG TACGCAAAGCTTTAAATCATGGTTTGGTAA 11166 30 100.0 30 .............................. AATACTTCAATTGCACCGAAAGCTTTTTCA 11106 30 93.3 30 ............................AC TAAGCGTTCCATCTCGTACCGCAACTTAGC 11046 30 93.3 30 ............................AG ACGAAGGACATTTAGTCGGAGGATCAGGAA 10986 30 96.7 31 .............................G AAAGAAGGTCCTGACAAGTTAGAAAATGAGA 10925 30 93.3 30 ............................AG TTATTAATATCTTTGCGTGCAAGATTACGC 10865 30 93.3 30 ............................GA AACGACATTCAGTTCTATCCCTTTTAATTC 10805 30 93.3 30 ............................AA ATGGTGGTTCATTGTGTCAGTTCTCTATAG 10745 30 100.0 30 .............................. TTATCGATGCGGAGACAAAACCATGCGCGG 10685 30 96.7 30 .............................G GAATGAACTTGATGTACAAGATCGTGAATT 10625 30 100.0 30 .............................. TTGCGTCATATCACGTTGAAGTTGATGAAA 10565 30 96.7 30 .............................G TCATGGCAATCGCGATACTTAAGTTGTTTT 10505 30 93.3 30 ............................AA TAACTCAGGCTTTAAGTCATTAGCCATATT 10445 30 96.7 30 ............................A. CTTCCATAAGTTTACGGCAATCAGATTGGC 10385 30 100.0 30 .............................. GTTATTCATATTTTTGTAGCTGGTGCAATA 10325 30 96.7 30 ............................A. CAAAGTGCAGAGATGAAGAAGTATTTTTAC 10265 30 93.3 30 ............................AC CAAACGCTTTAGCCTTGATATGGTCAACGT 10205 30 96.7 30 .............................A CGCGATCCGACAAAAAGAAATGCTGAATTA 10145 30 93.3 30 ............................GA GCCAAAAATGTTATGACCCTGCATAATCTT 10085 30 96.7 30 .............................G CTCCAGACGATTGGCGTGATACTCCGGATG 10025 30 93.3 30 ............................AA TCGTCTGGAGCAGGTTCAACTTCAGGTATT 9965 30 100.0 30 .............................. AGCAAAGCGTGATTCAGGTTCTTGATACCA 9905 30 100.0 30 .............................. TGGATTGTTTAAAAAACCTAAATGAGTTAT 9845 30 93.3 31 ............................CG CGAAAACAAGAACAGTTACTAAGATTGCTAT 9784 30 100.0 30 .............................. GATCAATCAACTTCTTACAGTCTGATTGGC 9724 30 93.3 30 ............................AG ACGTATATATGGACGTTCTGCAAAGTCTTT 9664 30 96.7 30 .............................A ACGGAATCAAAATTGCAGCAGCAGCTACAG 9604 30 93.3 30 ............................AG AAACGGGCAGAAGTTTCAGGACCTGTGGAA 9544 30 100.0 30 .............................. AAAAATGTAAATAAACTGATGGCTGGCTTA 9484 30 96.7 30 ............................C. TGTCGCTTCACGCGCACCTGTGCCCTGTAT 9424 30 96.7 30 .............................G CTTCAGCAGCGCAGACTCTCAGGAACTGAT 9364 30 93.3 30 ............................CA TTGGTGGCAATTGATCTTTTAAGCTGATCA 9304 30 96.7 30 ............................A. TCTAACAAGTGAATATAAAGAACTCACAAA 9244 30 96.7 30 .............................G AGCTGTGCATTTACGTTCAAACTGATAATT 9184 30 100.0 30 .............................. TAAGAACAATTCCAACAAGAGACAGATTTG 9124 30 93.3 30 ............................AC AAAATCCAATCGATCACGACGGCTTTTCAA 9064 30 96.7 30 ............................A. GAAGGTCGTACTTATCCTTATGTTGAACTT 9004 30 100.0 31 .............................. ACAAAATTTAAGCAACTTTTGCTTATCTTCA 8943 30 100.0 30 .............................. GTTGTCATGCAAGTTCTGCAAAAATGCCTT 8883 30 96.7 30 .............................A CGTTTTATAGACATTTATCTGAACTTTGCG 8823 30 93.3 30 ............................AA TGTATGTTTATTTTGATGCAGGCGGTAAAA 8763 30 93.3 30 ............................AA CGAGAAATTGGAACTACAAAAGAACCAAAA 8703 30 96.7 30 ............................C. ACAAGTTACCCTTAGAAGATGAGGGTAAAA 8643 30 96.7 30 .............................G AAGAATTTGCAGGCCGTAGATTAACTAAAA 8583 30 93.3 30 ............................AA GAAATATTTGGAAGTTGCAAAATATTAAAA 8523 30 100.0 30 .............................. TCTTTTGTAAGTCAGTTTTAACTTTATCTA 8463 30 100.0 30 .............................. CAAACCTTTTATTGATGAAATGCAACAAAA 8403 30 96.7 30 .............................G ATCCGCCTCTTGAATGTCCAGATATTGGCT 8343 30 93.3 30 ............................AC CACCTGCATGACGATCTACATCGGCATACA 8283 30 100.0 30 .............................. CTTGAGCCATTGTGCGGCTACCTTGTCGCA 8223 30 96.7 30 .............................A CCCAAAGAAAAACGGGTAATCAAACGGGTA 8163 30 93.3 30 ............................AA TTTGGAGAACTCCGCAGAAAACAAACTCTA 8103 30 96.7 30 .............................C CGCTTGTCTGTCTCTAACTTCCTGCGCTAT 8043 30 93.3 30 ............................AG ACTGAAATTGTTGTGAAGCGTTACCAACGT 7983 30 96.7 30 .............................A AACGTTCAAAAGCTAAAACAACAGCTGAAG 7923 30 96.7 30 .............................A CAAACACAGCTTTAGCAGCAACAGAGTTAC 7863 30 96.7 30 ............................G. TGGCAGTAAATCGCATGACATTGCGTTATG 7803 30 93.3 30 ............................AG CAAATGGCAACCAACTACCTGCTTCATCAT 7743 30 93.3 30 ............................AG ATGTTGAATTGTATAACATGGATGCGTTTA 7683 30 93.3 30 ............................AC TTTGGAATTCGTTTATGCAATTCGCGCATT 7623 30 93.3 30 ............................CG CAAGGGGCTTTTTAGTGCCTAGCTGCTCGA 7563 30 100.0 30 .............................. CGGCACCACCCAGAGTAACTTTACCTTTAG 7503 30 93.3 30 ............................AC AGGAAGTTAAGGACATTGAACAGGCAATGG 7443 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 7383 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 7323 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 7263 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 7203 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 7143 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 89 30 95.7 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATT # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTCTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //