Array 1 242840-241176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBE01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N37914 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242839 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 242778 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 242717 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 242656 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 242589 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 242528 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 242467 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 242406 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 242345 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242284 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242223 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242162 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242101 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242040 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 241979 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 241918 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 241857 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 241796 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241735 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241632 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241571 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241510 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241449 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241388 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241327 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241266 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241205 29 96.6 0 A............................ | A [241178] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 212722-213847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBE01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N37914 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212722 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 212783 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 212844 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 212905 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 212966 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 213027 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 213088 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 213149 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 213210 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 213271 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 213332 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 213393 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 213454 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 213515 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 213576 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 213637 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 213698 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 213759 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 213820 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //