Array 1 78194-76457 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUBI01000003.1 Apilactobacillus micheneri strain HV_65 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78193 29 96.6 32 .........................C... TACTTGAAGAAATGATAGCAAATACTGTAATG 78132 29 96.6 32 .........................C... AATTCCTTTAGCAAGAGCATTCGCAGTTTTAG 78071 29 96.6 32 .........................C... TGTTCTTTTGAAATTAAAAGAGTTATCTATCC 78010 29 96.6 32 .........................C... ATTAGTGATAATGCACGAATAGAAATTACTTA 77949 29 96.6 32 .........................C... TAGTTTGAACTTTTTGAAAATTTGATACGATA 77888 29 96.6 32 .........................C... ACAATGATACGAAAAATATTAATGAATTAAGA 77827 29 96.6 32 .........................C... AAAAGATGCAAAAGACTGTTATGATGCTATAA 77766 29 96.6 32 .........................C... TCGTAAATGCTTTCTTTCCAATATTTATCACC 77705 29 100.0 32 ............................. GCACAAGGCATTGGTTCAGCTAACACCTACGC 77644 29 100.0 32 ............................. TTAGCAATTGCTGCTTGCGCTTGCTGCCTTTG 77583 29 100.0 32 ............................. AAAAAAATGCTTAACGTTGGTGAACAATTAAA 77522 29 100.0 32 ............................. GCTTCCATTGATGATGTCGTAACATCAATAAC 77461 29 100.0 32 ............................. AGTCTTCTTTTCAATTTCTTTAGCCACATTAG 77400 29 100.0 32 ............................. CCATCTATTACCATTTGATTAAACATTTAATT 77339 29 100.0 32 ............................. AGGTTCATTATACAACGTGAGATTCATTTTGT 77278 29 100.0 32 ............................. AGTTGTACTAAATCGTAAGCTAACCAAAACTT 77217 29 100.0 32 ............................. GGTGCTGATAAAAACAATGCTAATGATCTGGT 77156 29 100.0 32 ............................. TAATATTCAAGCGACAGCCAATGTTCGAGTTC 77095 29 100.0 32 ............................. TATCATATATGACTGGTTTATCATTAGATTCT 77034 29 100.0 32 ............................. TCATCTGATGTGTTCTTCGAGTGGGCTAAGAA 76973 29 100.0 32 ............................. AGACATCTTATTCCTCCTTATTTTTGAATATA 76912 29 100.0 32 ............................. CAACAGCCATAGTTTTAACCTTATTTAAAACT 76851 29 100.0 32 ............................. CAATCGTTGGTCCACCAGATGGAATAGTCCAA 76790 29 100.0 32 ............................. GGCATCTTTCTTATGCCTTCTAACGGTTTTTT 76729 29 100.0 32 ............................. TTACGAAGTTTTAAGTCCCCTATTTTGCATTA 76668 29 100.0 32 ............................. TGGCTGATTATGAACGGATACACCTTTGATCA 76607 29 100.0 32 ............................. ATAAGGACAAAGTAAACTATGATGATTTAATC 76546 29 100.0 32 ............................. TGGCATTAATTTCGTGAGTTCCTAGTAGATCT 76485 29 75.9 0 .................A...AAA.AAT. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.2 32 GTATATCCCGCATGCGCGGGAGTGATTCT # Left flank : TTTAAGGATAATAATATAATTGAAATTGGAGCCTTAAAAGTTTCTAAAAATGGTGAAGAATATTTTGATCATTTAATCAAAAATGATTCTTTATTACCATCTAAAATTAAAAATTTAACAGGTTTAAATGACAAAATATTAAACGAACATGGCGAAGAATTGTTTTTAATCCTTAAAGATTTCAAAGCATTTATTAGCAATAAAGTTTTAACTGGATATAATATTAATTTTGATATCGACTTCTTGAATTATAATTTAAAGAAATTTGGTTTGGAACCTTTAAATAATAATATTGTAGATATTATTCCGTTAGTCAAAAAAGAAAAAATGTTTTTAAATAATTATAAGCTAGAAACAGTTCTACATGATTATGAAATTTTTGATGAAGTACCTCATCGGGCTCTTCTTGATTGTAAATTAATTAAATTATTATCAATAAAAGTGAATGGATTTTCCAGGAAAATAAAAAAGAAGTCTTGATCTATAGGCATTTTCCAAGT # Right flank : TATCTTAATACTAAGGAGCGTTAACATGACCCTAATCATTTTTCCCATATTTATTTTGTTTTTGATCATATCTTTCTTCAAAACAAGGTTTAGAAAAATTTCTATTGCAATATGTATACTAACAGGGTTACTTTTATTTATGCTGGTTTTATCAGGAATTTCAATGGCTAGATAATTGATTTTCAATATATAAGCAAGGAGGAAACTAATGCGAATAATTATTTCTATAATTTTATTATTCTTTTTTGGCTATGCACTAATAACATTTCTTACTTAATTTTTATAAACTAATCTTGGAGGATACATATGGATTTCTTAAAACTACTATCATTTTTCGGTAATGGGATTGGTTTGATTTTTAGAATGTGGAAATTAATCTTCTTCATTCTATGTTGTATTGCGATGTTTAATTTATTAGGTGGCGATGATGTGGATTGGGAAACTGTTGGTCAATACACATTATTGATCGTTATCTTTATTGCTTTTTGTATTGGCATTCA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATATCCCGCATGCGCGGGAGTGATTCT # Alternate repeat : GTATATCCCGCATGCGCGGGAGTGACTCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 90196-88337 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUBI01000003.1 Apilactobacillus micheneri strain HV_65 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90195 29 100.0 32 ............................. AAAGATATTCATAAACTTAGTTAAGAAGTTGT 90134 29 100.0 32 ............................. GATAAGTGGGTAGCAAGAATAACTAGATTAAG 90073 29 100.0 32 ............................. TAATAGAAAGAAATGGAATGAAAATACCAAAA 90012 29 100.0 32 ............................. ATTGTTTTCCGTTTGTACATATCGACTGTGTT 89951 29 100.0 32 ............................. TTTACAATTAACTAAGACAAAACCATTTTTCT 89890 29 100.0 32 ............................. CATATAAAGATGGGCCATTAGCTCCAAGTTGA 89829 29 100.0 32 ............................. TCTTTTCAAAATTATGCTGTGCTAAAGCTAAA 89768 29 100.0 32 ............................. ATATATATGAATCCTTAACTAAAATTGTAATT 89707 29 100.0 32 ............................. TAAAGGAAGGCGTACAGGCTGGATTTGAGTAT 89646 29 100.0 32 ............................. GGATTTTGCTTTTTGTAGTCGGTATTTAGCTG 89585 29 100.0 32 ............................. TGACCATACGGACGTCTTCAGGCTGGCAACCT 89524 29 100.0 32 ............................. CCTTTAGTGGACGTCTGATACCAATTGTGTAT 89463 29 100.0 32 ............................. ATATTTGAACCAAATGACACCAATGTGCGATT 89402 29 100.0 32 ............................. TAGAATCTTGCAACTCTCCACTTTGAGTAAAA 89341 29 100.0 32 ............................. GTATCCTTTACGATTTTAGTGTTAACAAATTG 89280 29 100.0 32 ............................. GACCTGTCCAAAATTGGCAGTCATAAACAAGG 89219 29 100.0 32 ............................. AGTTGACTATACATTGACATATGCTTTCTTTC 89158 29 100.0 32 ............................. ATGATTTGAATTCATACCATAGTCAACTTGAA 89097 29 100.0 32 ............................. AAACAGAATTTTAAAATTTCAATTCCTTTGGA 89036 29 100.0 32 ............................. GGTTATGTATCCGCTAGGAGGTATGAAAACAG 88975 29 96.6 32 .......T..................... TGTAAATTTAAATTCTTACTTTGATTTTCATA 88914 29 100.0 32 ............................. ACGAGCCTTAAGGTTTAGATTTTTTCCATTCA 88853 29 100.0 32 ............................. CATCAGTATTATATTTGTCTAAAAAACTATCA 88792 29 100.0 32 ............................. GAACTTTTTTGAATTAAGTGTTGTTTTAAAAG 88731 29 100.0 32 ............................. ATCTTTCAAATTGCACTCAACTGGAAGAATTG 88670 29 100.0 32 ............................. TCTTTTTGAAGATATTAATCCTGATGACATTC 88609 29 100.0 32 ............................. GTCGATTGCAAGATTTTGGTATTAAACCATCT 88548 29 100.0 32 ............................. TTTTATAAATATCCATAACACTCATATTTTGC 88487 29 100.0 32 ............................. TACAGATGATAGTTTAAAAAACTCCTCATTTG 88426 29 100.0 32 ............................. TATCATCCCCAGCGTTAGGCACATCAAAGTCA 88365 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTATATCCCGCAGACGCGGGAGTGATTCT # Left flank : GCACAAGTAATAAACTTGTCCCCTCATATATGTAAGATATATTGAAACGAATCCTTAGCTCTTATATAATAACTAAGGAGCGTTAAAGGTTAACAAGTAGTCCGATTACTTTGTTAGCTGGTCGATAATTACTGGTAATAATTGTCGATCAACGCTCTTTTTCTATGTTTTATTTTTAGTATGTTTATAAGTATAGCGGTTTTTGGGTGGGGTGTAAATAAGAAGATTTTATATTGATATAACATTATTAATCATATAAAATAATATTTGTAGCATAATATGCTTCTTTTATTTAATTTTCAATAAACTCATCACAAGATAATCTATATTGATTGTCTTTTCTTTATTACATTAAGTGGTCATGAATTAAATTTCATGGCCACTTTTTTATTTTAAATAATTATGTATGAATAAATAATTATTAATGTTAATATAATAAAAGTAAATGTAATTTGCATTTATTAAAAATGTAATTGTTGTTATATCAGCTTTTTCTAAGT # Right flank : TTTGACGGTTACGGAAATCAAAGCGAAATAGAGTATATCATATATAAATGAAAGGAGCTTTAATTTATGAGTTTACATTTAGAGTGGTTAATACCTATGATATTTGTTTTATTCTTTGATTATATTGTATTTTTTAAAATCATGAAGTGGAAATAATATTTGAATTTAATTGATTTGCATTAAAATTACAAGCGTAGTTTTAATTCTTTATTCATATTATTTGTATTTAAAATTTATTTATTGATTGGAGAAGTATATGGTAGACAAAATTTTATGGGCTAAAAAATCTTTAGGTAATGATGGGAATCCTAAATGGTTGCCCTTATATCAACATTTATTAGACACAAAATTTGTGATTCATATGTTATATAGATTTTATTTGAGTGATCATCAAAGAAATATTATAAAAGAGTCTTTGGAGTCTTCTTTCAGCAATTCAAATGAAGAAAATTTGATTCAATTTATTGGTATTACACACGATATTGGTAAAGCTACACCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATATCCCGCAGACGCGGGAGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //