Array 1 342213-339077 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWFD01000003.1 Vagococcus fluvialis bH819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 342212 36 100.0 30 .................................... TGATTCTCAAATGCTAAAAGGAATACTTTA 342146 36 100.0 30 .................................... TATAGATAAAAAGATTAAAAAGAAACAATA 342080 36 100.0 30 .................................... GAGTAAAACTGAATTAACTCGGCAAACATA 342014 36 100.0 30 .................................... AACGTCATATAAAATTATAGCTAGTTGAGA 341948 36 100.0 30 .................................... TATGGAAAAAGCAGAAGGAACGACTAGTTA 341882 36 100.0 30 .................................... GGTGGACCTTTTGTTGACGCGTTACGAAGT 341816 36 100.0 30 .................................... ATTGACGTATCAACTAAACAAGCACGTGCT 341750 36 100.0 30 .................................... CTTATCAAATTACTTTGTCAGTTCGCTGCA 341684 36 100.0 30 .................................... ATACAAAACTAGTAATGCTACTAGTCAAGA 341618 36 100.0 30 .................................... TGCGAATATTTTGAATGTTCAGTTTATGAG 341552 36 100.0 30 .................................... GACGTAGTAAAAGAGTTAGCTCGAGGTATT 341486 36 100.0 30 .................................... TCGAACGCTACCAAAATCTAGCGAGCCAAT 341420 36 100.0 30 .................................... AATGGTTGCTTTTGATGAACTTACCTCTTT 341354 36 100.0 30 .................................... GTTTACAGTGGTATGATGATCTTTGTTTCC 341288 36 100.0 30 .................................... TACTCTGTTTCTTTCGCATCCAATTCTTGT 341222 36 100.0 30 .................................... AGAAGTTTCCTTCGGACTTTGCGGAATATA 341156 36 100.0 30 .................................... CGGTAGTCTTGGTCTTTCCACCAATCAAGC 341090 36 100.0 30 .................................... AGCAGAACAGACGACACGCTTACCGCTTGA 341024 36 100.0 30 .................................... AGTCCTTTTCTAATACGTGCGTAAATAAAC 340958 36 100.0 30 .................................... TCAGATGAACTAATATTGTAATGTCTACCT 340892 36 100.0 30 .................................... TCGTTACGTTGTAAAACTGCGTTTAATATT 340826 36 100.0 30 .................................... CGACGTAGACGAACCATTGAACACTTTTAT 340760 36 100.0 30 .................................... TCGCTTCGGGAACGGTAAAAACTCGGTTAA 340694 36 100.0 30 .................................... TTTTTCGGCGATACAACCGTCAAGCGGTAA 340628 36 100.0 30 .................................... CGTCATAGCTGCGGCGGAAACGATAGACAT 340562 36 100.0 30 .................................... TTGATTTAAAAGCTAATGTGGAAGATACTA 340496 36 100.0 30 .................................... TCGTTACGTTGTAAAACTGCATTTAATATT 340430 36 100.0 30 .................................... ACGTCCCATTTTTAAGTCAAAGTTTTCTCT 340364 36 100.0 30 .................................... ACCCAAATTGTTGTAACATGTCCACAAGCC 340298 36 100.0 30 .................................... TATGTCTGAACCAAGTAAGTTAGTTGAAGC 340232 36 100.0 30 .................................... AAAATAAAAAACCAACCCACAAAATTAGGT 340166 36 100.0 30 .................................... TTTTTAAGTTCTTTGTACTCTTGATCTGAT 340100 36 100.0 30 .................................... ATTTTCCATATAAAGAATTTAGCATTATTT 340034 36 100.0 30 .................................... GGCAGCTCAATCAAGAGCCATGACAACGTT 339968 36 100.0 30 .................................... TGTTTGCCATTTGGTAATTGGTAGGCTTCT 339902 36 100.0 30 .................................... TTTAGGAAGCAGCTCATAGCCTTTCTTAAA 339836 36 100.0 30 .................................... ACGTCCCATTTTTAAGTCAAAGTTTTCTTT 339770 36 100.0 30 .................................... TCTTGATAAACCTTTAGATATATTTTGCAT 339704 36 100.0 30 .................................... ATTTGATTTCATAATGGTGTGCTTTTCTTC 339638 36 100.0 30 .................................... TTTTGCCTTTTGAGGATTGCGAAAGTCTTG 339572 36 100.0 30 .................................... AGTCTCATCTCACTGTATTTTGAATTGAAT 339506 36 100.0 30 .................................... AATCAAAAGTACCTCGCAACCCCCTATTTT 339440 36 100.0 30 .................................... AGAAATGATATCCAATATGGTAACAGTGGT 339374 36 100.0 30 .................................... AAGTCGAATTTGGATTCAGAGAGCTTTGAA 339308 36 100.0 30 .................................... CATTTCTTCTGTTTCATTTGGGACATCATC 339242 36 100.0 30 .................................... AACGAAGAAAAAGTTAGTAAGAGTGATGAA 339176 36 86.1 28 ................A........AT...T....A AGTGATGTATTTTCGTATGGTTTCTTCA 339112 36 86.1 0 .......G.T....T.............A......T | ========== ====== ====== ====== ==================================== ============================== ================== 48 36 99.4 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : AATTAAGTCTAAGATAAACCAATTAACTTCAGAAATAAATGATATAATGAATTATGAGTTATTAGATCATGAGATTGATTTAGAAGAAGACGAAGAAATAACTTTTCAAGAATTATTTAAAGTTTTAGGCATAAGAATAGAGACTAAAAGTGATTCAATATTTGAAAGAGTAATTGAAATTGTTCAAATGTTTAAATATTTATCGAAAAAAAAGTTATTAATTTTAGTTAATGCTTCCTCTTACTTTACAGATAGAGAATTAGAAGAACTAATTGAGTATATATCTTTATTGCAAATTGATGTTTTATTTATTGAACCTAGAAAGAGAAAAGTAGTTTCTCAGTATGTGATCGATGAGGATTTTTTTGTTCAATTTGAATAAAGCAAGGGCCCTTTGATAATTTAATAAGTAATAATTAAAAGAAGTATTCAAACAAGATTCTTGCTATGGATGAGTAGTGCGATTACGAAATTTCGAGAGGGAAAAATTTTTCTACGAG # Right flank : TTAACTAAATGTAAAATTGAAGTATCTTTTATTTTCAAATAAAGGAGCTCTTAAATAATGAAAGAAAAATTTACGGTTTATCATATTGTTACAAGGAAAAAGATGTATATTGGTCAAATTTTTAATTTTGATAAAAATCAAAAAAATCAATTGTATCGTTTCTTTTTTGAAAAAGAACAATCTAATTCTAAAGAACAAAATTATATTCAAATTATTAATAATAATTATGTAAACGATGAAATTAATTTGAATTAAAAAGATACTAAAATTGTGTTAGATTATGTGGATCAAACAACAAGGGCTGTTAGAGAAACGATTGTTGAGATGGTGAGATTAGAAGCGTATCCAAGCTACCCATCCCGCTTGTCTTGTTTATATGCAACGAAAAATTATGAAGAGGCACTGCAATGGAAAACTATATTTGATTCTTATAACCGACACGTGTTACAAATAGTTAAATTGAAAGTGCAAGGTTTGATTTTTGAAGGAGATGGAAATCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //